Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10750 435 / 3e-153 Phosphoenolpyruvate carboxylase family protein (.1) AT4G24080 266 / 1e-88 ALL1 aldolase like (.1) AT4G24070 66 / 5e-14 carbon-carbon lyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084900 [exp] 236 / 2e-77 AT4G10750 211 / 3e-08 Phosphoenolpyruvate carboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017323 [exp] 440 / 4e-155 AT4G10750 440 / 7e-155 Phosphoenolpyruvate carboxylase family protein (.1) Lus10000224 [exp] 412 / 4e-144 AT4G10750 409 / 3e-143 Phosphoenolpyruvate carboxylase family protein (.1) Lus10000223 [exp] 147 / 1e-43 AT4G10750 144 / 9e-43 Phosphoenolpyruvate carboxylase family protein (.1) Lus10003220 [exp] 80 / 2e-18 AT4G10750 93 / 5e-24 Phosphoenolpyruvate carboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF03328 [poplar] [flax] HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family
Representative CDS sequence Show only first row Show all	>Potri.003G145700.1 pacid=42786983 polypeptide=Potri.003G145700.1.p locus=Potri.003G145700 ID=Potri.003G145700.1.v4.1 annot-version=v4.1 ATGCCAACCCTCACCCACCTCGCCGCCTCCGCCGCCTCTTCCCTCGCATTTTTAAATAACCAAAAACCCACAACAAAATCCCTAATTCCCCCCTCTAATT TAATCAAATACTCCCTCAATTTCAAAACCCTAAAACCCCCTAAACTCTCAATCAAAGCTAAATCCTCCACCTCTTCCAATCCCTCCATCGTCAATGGCGC CTCTGCCCCCTCCGCGCCCGATTCCCTAAAATCACGCCTCCAAAACGGCGAAACTCTCTATGGAATATTCCTCCTCAGCTTCTCCCCAACCATTGCCGAG ATCGCTGGCCTCGCCGGTTATGACTTCGCCGTCGTGGACATGGAACACGGTCCTGGTGGCATCACCGACGCTCTCCACTGCCTCCGTGCTCTCGCAGCGA CTCGAACCCCGGCGATCCTACGGTTGCCGGAGAGTTCTCCAACTTGGGCCAAAAAAGCCCTCGATCTAGGCCCGCAAGGGATTATGTTTCCGATGATTGA AAGCCCTAAAATGGCTAAGAAAGCGGTGTCGTATTGCAGATTTCCACCCGAGGGTATTCGCGGATCGGCTCATACGGTAGTGAGGGCATCTGATTACGGA ATCGATGAAGGGTATTTGAGTAATTACGCGGAGGAGTTATTGATCATGTGTCAGGTAGAGAGCGAGGAAGGTGTGAAAAAGGCAGAGGAAATCTCAGCCG TGGATGGGGTTGATTGTGTGCAAATGGGACCGTTGGATTTGAGTGCTAGCATGGGGTATTTGTGGGACCCTGGGCACAAGAAGGTTAGAGAGATGATGAG GGTATCCGAGAAGGGAGTTTTGAAAGGCGGGGCCTATTTGGGTGGTTTTGCTATGCCACATGATGGACCCATTGATCTTAAGGCACGTGGATATCGTATG GTGTCTGGAACAGTTGATGTGGGGCTATTTAGAAGTGCTGCTGTTGATGATGTGAGGAAGTTCAAAATGAGTTTGATTCAAGGGTCTGATGACGAGGCGG ATGATGGCAAAGATGGTGATGACAAGTACTGGAGTGAGTGA
AA sequence Show only first row Show all	>Potri.003G145700.1 pacid=42786983 polypeptide=Potri.003G145700.1.p locus=Potri.003G145700 ID=Potri.003G145700.1.v4.1 annot-version=v4.1 MPTLTHLAASAASSLAFLNNQKPTTKSLIPPSNLIKYSLNFKTLKPPKLSIKAKSSTSSNPSIVNGASAPSAPDSLKSRLQNGETLYGIFLLSFSPTIAE IAGLAGYDFAVVDMEHGPGGITDALHCLRALAATRTPAILRLPESSPTWAKKALDLGPQGIMFPMIESPKMAKKAVSYCRFPPEGIRGSAHTVVRASDYG IDEGYLSNYAEELLIMCQVESEEGVKKAEEISAVDGVDCVQMGPLDLSASMGYLWDPGHKKVREMMRVSEKGVLKGGAYLGGFAMPHDGPIDLKARGYRM VSGTVDVGLFRSAAVDDVRKFKMSLIQGSDDEADDGKDGDDKYWSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.003G145700 [exp]	0	1
					Potri.011G026450 [exp]	9.69	0.9587
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	13.85	0.9586
					Potri.002G020750 [exp]	22.60	0.9574
					Potri.014G065951 [exp]	23.87	0.9584
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	25.80	0.8150	GCR1.1
AT1G03910			unknown protein		Potri.001G242900 [exp]	27.98	0.9564
AT2G25730			unknown protein		Potri.018G035601 [exp]	29.32	0.9555
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	30.13	0.8120
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	30.41	0.8446
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	33.46	0.9528	GAPDH.2

Compare expression of checked genes

Potri.003G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.