Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18760 51 / 1e-07 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G12190 48 / 1e-07 RING/U-box superfamily protein (.1) AT3G30460 49 / 2e-07 RING/U-box superfamily protein (.1) AT3G60080 50 / 5e-07 RING/U-box superfamily protein (.1) AT1G80400 50 / 5e-07 RING/U-box superfamily protein (.1) AT4G12210 49 / 5e-07 RING/U-box superfamily protein (.1) AT1G18770 47 / 9e-07 RING/U-box superfamily protein (.1) AT4G05350 48 / 1e-06 RING/U-box superfamily protein (.1) AT2G39720 49 / 2e-06 RHC2A RING-H2 finger C2A (.1) AT1G60360 48 / 2e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062400 [exp] 58 / 4e-10 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 57 / 1e-09 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G083001 [exp] 56 / 2e-09 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G185200 [exp] 56 / 3e-09 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 56 / 3e-09 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G322600 [exp] 53 / 3e-08 AT5G08139 71 / 5e-14 RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 50 / 2e-07 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.001G231000 [exp] 49 / 6e-07 AT3G60080 100 / 3e-25 RING/U-box superfamily protein (.1) Potri.019G086500 [exp] 49 / 6e-07 AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017253 [exp] 57 / 3e-10 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10005617 [exp] 53 / 7e-09 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10004636 [exp] 50 / 1e-07 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10017865 [exp] 50 / 4e-07 AT5G20910 389 / 2e-136 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10034667 [exp] 50 / 5e-07 AT5G20910 391 / 2e-137 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10011392 [exp] 49 / 1e-06 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016541 [exp] 47 / 2e-06 AT5G57750 68 / 2e-14 RING/U-box superfamily protein (.1) Lus10033075 [exp] 48 / 3e-06 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10019150 [exp] 46 / 3e-06 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10017750 [exp] 47 / 4e-06 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.003G145800.1 pacid=42786479 polypeptide=Potri.003G145800.1.p locus=Potri.003G145800 ID=Potri.003G145800.1.v4.1 annot-version=v4.1 ATGTCTTTTGTTCCTCGTATTGAATTAGAAATTCAAGAAAATGAGAGCATCTTGCCAGTTAACCAAACACCCCCATGGCCTTCAGCTTTCTTGATCAAAT TCTGTGTTAATCATTCGATCAATGTGTTGTATCCGACAAGAAAACTCCAGCGTTTTGCAGGTGTAGAAACACGGATATGCAAACTCCTTGAACCAGTTAA AATAGGGCAAATATCTACCACGTTGTACTGCCCACAGCACCAGTTTCTCTCCCATGACAAGGCAGAACGCTTCTTTAATCAAGCTCTCGAAGTCTTTTGC GTGCCTGTGGATCAAGGGATTGAGGATATTACTAACAGATTCTCCTCCGAGATAGTGTTGATGGCTTTTGATGCTAGTTTTAATCGTCGGAGCATAGTGC CTGTTGTTGTTGAAATTAAAGTTGATCTGTGGCTACAATACAATCCAGGAATAGTCAAGCATTTTATAGCAGGCTACGTGGGTAGACTCATGGAGAGAGG AGCTAGAGTTGATTTTTCATCTGGGCAGCTAATGAAGGGAATCAAGCTGGAAAGCAGTTCAATGGAACAGTGCAGCATTTGTTTGGAAAGCTTGGGAGGT GAAGAACCGGCACTTGAGCAGCCATGTTCGCACATCTATCATCCAAGTTGCGCTCGCAGGTGGTTCAACGACAGCTCATCTTGTCCTTTGTGCCTCTTTG GCATTGATTGA
AA sequence Show only first row Show all	>Potri.003G145800.1 pacid=42786479 polypeptide=Potri.003G145800.1.p locus=Potri.003G145800 ID=Potri.003G145800.1.v4.1 annot-version=v4.1 MSFVPRIELEIQENESILPVNQTPPWPSAFLIKFCVNHSINVLYPTRKLQRFAGVETRICKLLEPVKIGQISTTLYCPQHQFLSHDKAERFFNQALEVFC VPVDQGIEDITNRFSSEIVLMAFDASFNRRSIVPVVVEIKVDLWLQYNPGIVKHFIAGYVGRLMERGARVDFSSGQLMKGIKLESSSMEQCSICLESLGG EEPALEQPCSHIYHPSCARRWFNDSSSCPLCLFGID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12190			RING/U-box superfamily protein...		Potri.003G145800 [exp]	0	1
AT5G02920			F-box/RNI-like superfamily pro...		Potri.017G146500 [exp]	7.87	0.8842
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049800 [exp]	26.32	0.8448	Pt-HSP17.9
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	26.90	0.8447
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Potri.006G223900 [exp]	29.74	0.8446	HSP17.11
AT2G29500			HSP20-like chaperones superfam...		Potri.019G081200 [exp]	36.08	0.8426	Pt-HSP17.5
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	37.78	0.8344
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049900 [exp]	38.24	0.8382
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	41.07	0.8422	Pt-HSP18.4
AT1G07400			HSP20-like chaperones superfam...		Potri.009G039200 [exp]	42.04	0.8350
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Potri.002G166300 [exp]	44.54	0.8419

Compare expression of checked genes

Potri.003G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.