Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41970 556 / 0 Metal-dependent protein hydrolase (.1) AT3G49320 497 / 3e-177 Metal-dependent protein hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007900 [exp] 524 / 0 AT3G49320 525 / 0.0 Metal-dependent protein hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017324 [exp] 587 / 0 AT5G41970 574 / 0.0 Metal-dependent protein hydrolase (.1) Lus10033229 [exp] 568 / 0 AT5G41970 573 / 0.0 Metal-dependent protein hydrolase (.1) Lus10008867 [exp] 500 / 3e-178 AT5G41970 507 / 0.0 Metal-dependent protein hydrolase (.1) Lus10000877 [exp] 462 / 9e-163 AT5G41970 456 / 9e-161 Metal-dependent protein hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03690 [poplar] [flax] UPF0160 Uncharacterised protein family (UPF0160)
Representative CDS sequence Show only first row Show all	>Potri.003G145900.1 pacid=42785065 polypeptide=Potri.003G145900.1.p locus=Potri.003G145900 ID=Potri.003G145900.1.v4.1 annot-version=v4.1 ATGTTGGCACTTACAAGAGGGTTTAATCTCAACTGGAAGCTATTCTCCAACTCCAACCACTCTAGAACCCTAATTCCTTCTCTCATTAAACTCCCTCTCA TGGTAGCCACGCGTCCTTCAGTTTCTTCTCCTACTTACTCCACTGGATCTCCTGTTAACGTGCCCCTAAAGCACGTGGGCACACACAATGGCAGCTTTCA CTGTGACGAGGCTCTTGGCTGCTTCATGATTCGCCTCACTAGCAAGTATTCCAATGCTGAAATTGTACGAAGCCGCGATCCGCAGGTGTTGGAGGGTCTT GATGCCGTGCTTGATGTTGGAGGCGTGTATGATCCAAGTCGTGATCGGTATGATCACCATCAAAAGGGTTTTGGGGAGGTTTTTGGACATGGGTTCTCTA CCAAGCTTAGCAGTGCTGGACTTGTGTATAAGCACTTTGGAAAGGAGATTATAGCCAAGGAGCTTCAAGTGGATGAAGGTCATCCAGATGTGCACCGCTT GTTCTTGGCTGTTTACAAGAGCTTTATGGAGGCAATCGATGCCATTGACAATGGAATCAATCAATATGATACAGACCAGCCTCCAAAATATGTGAATAAC ACACATTTGTCTTCAAGAGTTGGGAAATTCAACTTGGATTGGACAGATCCTGATCAATCATCTAAGAAGGAGAATGAGGCATTTGAACGAGCAATGGCTC TCGCTGGCAGTGAGTTTTTAGATAATGTTCGCTTTCATGCAAAATCTTGGTTACCAGCTCGATCAATTGTAATGGAATGTCTCGCAACTAGATTTGATGT TGATCCTAGTGGTGAAATTATGGTCTTGAAAACATTTTGCCCTTGGAAACTTCACTTGTTTGAGCTCGAGGGTGAACTGAAGATTGATCCTTTGGTTAAA TATGTTCTCTATCAGGATGACAGGAGCAAACAGTGGCGAGTGCAGGCAGTTGCGAAATCACCTGACAGTTTTGAGAGCCGGAAGGCTCTCCCAGCTCAGT GGCGAGGTCTGAGGGATGATGACCTCTCGAGGGAGTCTCAAATCCCTGGTGGTGTTTTTGTCCACATGAGTGGGTTCATTGGTGGGAATCAAAGCTTTGA GGGGGCTCTGGCCATGGCAGGAGCTGCATTGAAACTTTAA
AA sequence Show only first row Show all	>Potri.003G145900.1 pacid=42785065 polypeptide=Potri.003G145900.1.p locus=Potri.003G145900 ID=Potri.003G145900.1.v4.1 annot-version=v4.1 MLALTRGFNLNWKLFSNSNHSRTLIPSLIKLPLMVATRPSVSSPTYSTGSPVNVPLKHVGTHNGSFHCDEALGCFMIRLTSKYSNAEIVRSRDPQVLEGL DAVLDVGGVYDPSRDRYDHHQKGFGEVFGHGFSTKLSSAGLVYKHFGKEIIAKELQVDEGHPDVHRLFLAVYKSFMEAIDAIDNGINQYDTDQPPKYVNN THLSSRVGKFNLDWTDPDQSSKKENEAFERAMALAGSEFLDNVRFHAKSWLPARSIVMECLATRFDVDPSGEIMVLKTFCPWKLHLFELEGELKIDPLVK YVLYQDDRSKQWRVQAVAKSPDSFESRKALPAQWRGLRDDDLSRESQIPGGVFVHMSGFIGGNQSFEGALAMAGAALKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	0	1
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	1.00	0.8597
AT5G62290			nucleotide-sensitive chloride ...		Potri.015G129900 [exp]	1.41	0.8575
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.006G275100 [exp]	2.82	0.8296	Pt-AJH1.2
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	3.00	0.8398
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	4.47	0.8276
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.008G171600 [exp]	6.63	0.7933
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	8.94	0.7777
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	11.74	0.8204
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Potri.002G164800 [exp]	12.36	0.7991
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	12.40	0.7670

Compare expression of checked genes

Potri.003G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.