Plant FIBer expression Database

Potri.003G146200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41950 684 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G050600
[exp]
48 / 1e-05 AT5G41950 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001675
[exp]
728 / 0 AT5G41950 676 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10017329
[exp]
678 / 0 AT5G41950 620 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10025650
[exp]
45 / 0.0001 AT5G41950 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence
>Potri.003G146200.3 pacid=42785348 polypeptide=Potri.003G146200.3.p locus=Potri.003G146200 ID=Potri.003G146200.3.v4.1 annot-version=v4.1
ATGACTCCCGAAGAACCCGAATTGAAAAATGGACTCGAACCTAAACCCGCAACTGAACAAAAACAAGATCCGGAGCTAGAGACAATGGCAGCACCGGAAT
CAAAGCCAGCACCGGAACCAGAACCAGAACCAGCAACAATTCACGTCAGGAGCGCAGATCCTGAGGCAGAGGAGCCAAATGAAACCGAGATCCAATCAAA
CGAATCAGAGAAACCTGAATCGAACGAGCAAAATGCGAGTCGTCCTGCTGAGCTACAACAGAACAGAACATTCACGATGAGAGAATTGCTCACTGAATTA
AAAACCGAAGAAGGCGACGATGCGGCAAGCACTCCTCTCAGTCAACAGAGCACACAGCAGCAGCAGCAAAATAATGCGGCAATGGAATTGATTGATAGTG
TTACCAGTACTGATGAGGAAGGTCGGTCGCGTCAGCGTGTTCTCACATTTGCTGCCAGGAGGTATGCGAGTGCTTTAGAGAGAAATCCAGACGATTATGA
TGCGTTATATAATTGGGCATTGGTTCTTCAGGAAAGTGCAGATAATGTTAGTCTGGATTCTACTTCACCTTCTAAAGATGATTTGCTTGAGGAAGCTTGT
AAAAAATATGATGAGGCTACACGTCTTTGCCCAACACTTAATGATGCTTTTTACAATTGGGCTATAGCAATTTCTGATCGGGCCAAAATGCGTGGTCGTA
CAAAGGAGGCTGAGGAACTGTGGAAGCAGGCAACGAAAAACTATGAAAAAGCTGTCCAACTTAACTGGAACAGCCCCCAGGCACTCAATAATTGGGGACT
TGCTCTACAGGAACTCAGTGCAATTGTTCCTGCAAGAGAAAAACAAACCATTGTGAGAACTGCAATTAGCAAGTTCCGTGCAGCAATTCAGTTGCAATTT
GATTTTCATCGAGCAATCTACAACCTCGGAACTGTTTTGTATGGGCTAGCCGAGGACACATTAAGAACCGGGGGAACACCCAATGCTAAAGATGTTTCCC
CTAATGAGTTGTATAGCCAGTCTGCTATCTACATTGCAGCTGCTCATGCATTGAAACCAAATTACTCGGTATATAGCAGTGCATTGAGGCTTGTGCGTTC
CATGTTACCTTTACCATATCTTAAAGTTGGATATCTAACTGCTCCGCAAGCAGGGAAACCAATTGCACCTCACAATGATTGGAAGAGATCAGAATTTGTT
TTGAATCATGAAGGGCTTCAACAGATTAGCAAATCAGAGCAAAAACAAGTTCGCCGGAGCCTCTCTGGCAGACCATCAGATGTATCGAATAGTGACAAAA
AGGCTATCAAAGTCGAGGTTCCAGATATCGTTTCTGTATCAGCATGTGCTGATCTGACTTTGCCACCTGGTGCGGGCCTCTGTATAGATACTATTCATGG
GCCACTTTTCTTGGTTGCTGATTCATGGGAATCCCTGGATGGATGGCTTGATGCAATTCGTCTGGTGTACACAATCTATGCACGAGGCAAGAGTGAGGTC
CTAGCAGGTATCGTAACAAGCTGA
AA sequence
>Potri.003G146200.3 pacid=42785348 polypeptide=Potri.003G146200.3.p locus=Potri.003G146200 ID=Potri.003G146200.3.v4.1 annot-version=v4.1
MTPEEPELKNGLEPKPATEQKQDPELETMAAPESKPAPEPEPEPATIHVRSADPEAEEPNETEIQSNESEKPESNEQNASRPAELQQNRTFTMRELLTEL
KTEEGDDAASTPLSQQSTQQQQQNNAAMELIDSVTSTDEEGRSRQRVLTFAARRYASALERNPDDYDALYNWALVLQESADNVSLDSTSPSKDDLLEEAC
KKYDEATRLCPTLNDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF
DFHRAIYNLGTVLYGLAEDTLRTGGTPNAKDVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKVGYLTAPQAGKPIAPHNDWKRSEFV
LNHEGLQQISKSEQKQVRRSLSGRPSDVSNSDKKAIKVEVPDIVSVSACADLTLPPGAGLCIDTIHGPLFLVADSWESLDGWLDAIRLVYTIYARGKSEV
LAGIVTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41950 Tetratricopeptide repeat (TPR)... Potri.003G146200
[exp]
0 1
AT1G14830 DRP1C, ADL5, AD... DYNAMIN RELATED PROTEIN 1C, AR... Potri.010G105900
[exp]
1.00 0.9730 Pt-ADL5.1
AT1G64650 Major facilitator superfamily ... Potri.003G145600
[exp]
2.00 0.9716
AT1G53290 Galactosyltransferase family p... Potri.011G111700
[exp]
2.00 0.9723
AT5G05010 clathrin adaptor complexes med... Potri.012G125500
[exp]
2.44 0.9723
AT1G76550 Phosphofructokinase family pro... Potri.005G257800
[exp]
2.64 0.9613
AT3G07950 rhomboid protein-related (.1) Potri.008G041100
[exp]
3.16 0.9627
AT5G26330 Cupredoxin superfamily protein... Potri.010G089900
[exp]
3.46 0.9534
AT3G52930 Aldolase superfamily protein (... Potri.018G090100
[exp]
3.74 0.9501
AT3G43190 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE S... Potri.018G063500
[exp]
4.24 0.9590 PtrSuSY1,Pt-SUS1.2
AT5G49460 ACLB-2 ATP citrate lyase subunit B 2 ... Potri.008G105300
[exp]
5.47 0.9500 ACLB.2

Potri.003G146200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.