Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41940 624 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 557 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 551 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 522 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 130 / 1e-31 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 122 / 5e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 120 / 3e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 120 / 3e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 115 / 2e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 115 / 3e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084300 [exp] 909 / 0 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 695 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 664 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 129 / 3e-31 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 127 / 9e-31 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 125 / 1e-30 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 123 / 3e-29 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 120 / 5e-29 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.017G023200 [exp] 121 / 1e-28 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033232 [exp] 687 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 615 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 612 / 0 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 612 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 363 / 1e-119 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 125 / 1e-31 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 130 / 2e-31 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 129 / 4e-31 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 127 / 7e-31 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 126 / 2e-30 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.003G146300.1 pacid=42784539 polypeptide=Potri.003G146300.1.p locus=Potri.003G146300 ID=Potri.003G146300.1.v4.1 annot-version=v4.1 ATGGTGTTATCGAATCAAAAGCCGGGACTCCTATTACCACCATCCCTTAAGGTCATCTCCGCCATTTCACTGTTGATGCTCTTCTCCTCCTCCGCCGGCG GCGGTGCTTTTTGGAAATGGATCGTGTTCGCCGAAGCTAGCACCGGAAACACTGGGACAGGGAGGAACGGCTGGGTCGTTGGTGGCGTTGGCGGTGGTTT ATGGGGCGCCGCTACGTCTTCTTCCAATGTTGGTATAGCCATCGCTGTCACGGCCATGGCCGGTATCGCCTTGGCCGCCACCGTCGTCTATTCTCGTAGG GGTAGTCTTAAATCGCCTTGGTCGCGTAGGAGAAGAAAACATGCGCTTTTACCAAAGCAATGGAAAAGTTTATTTATGCCTGATGGGAAATTGTGTGATG GTGGTGTCAAGTTTCTGAAGAAAGCCCGAAGTGGGGGTGTTGATCCAAGTATTAGACCAGAGGTTTGGCCATTTCTCCTTGGAATCTATGATGTGAACAG TTCCAAGGAAGAAAGAGATTGCATTCAAGATGAGAAAAGAAAAGAATATGAGAATCTACGGAAACAGTGCCGAAGACATCTCAGATGCAATGATAGGAGT TTTAAGGCCAAGCAAGCTGTTGGAATCAGCAGCGCTGAGGTTAGCGGGGACTCGAGTCAAGTCATGGATTTCCCTGGATTAGAAGATGTTAATAGTACCA GGATGACACCTTCTGCTGAGCAAGGCAACTTATCTGCTGAGGATTCAGATTTCCCTGATGAAGCTCCTCAGGGCTCTGAATCAATATTGGAAGGAGGTGA TGATAGGAGTGTGGTCACCTATGAAGATGGCTTGGCTGGAGACACGGAGTCAACTGATTCCGATTCCTCTGAAGAACCAGAAATTGCAGAATCTTTTCTT GCAACTGAATTTACAGGTGAAAATGATTTTGATTTGCCTTCTCAGGAGAATTCCTCTCCCTTTGAGACAAAGAGCAGGTTGAACTTGCAGAAAGATGAGG ATTTTGCCACATGGCAGAGAATCATTCGTGTTGATGCAGTGCGGGCAAATGGTGAATGGATAATGTACTCTCCATCTCAGGCAGCAGTATCAGAGATGAA GGCACGACGATTGGCTGAGAGTGTAGGGTTGCAGGACTATGATCACTTGGAGCCAAGCAGGATCTTTCATGCTGCTCGCCTCATCACTATCCTTGAGGCA TATGCACTTTATGATCCTGAGATTGGTTACTGTCAAGGAATGAGTGATTTACTCTCACCCATTATTGCAGTGATGGAGGAGGATTTTTTAGCCTTCTGGT GTTTTGTGGGCTTCATGAAGAAAGCTCGGCACAATTTCCGTCTCGATGAAGTGGGAATCCGGAGGCAACTGGGTCTTGTTTCCAAGATAATCAAGTGCAA GGATAGCCATCTCTACAAGCACCTGGAGAAGCTTCAAGCAGAGGACTGCTTCTTTGTGTACAGAATGGTGGTGGTTCTTTTCAGAAGGGAGTTAAACCTT GATCAAACACTCTGCCTCTGGGAGGTGATGTGGGCTGACCAGGCAGCAATACGGGCAGGGATTGCCCAGTCTGCCTGGGGGAGGATGAGGCTAAGGGCCC CTCCTAGTGATGATTTGCTGCTTTATGCAATAGCAGCTTGTGTGCTGCAGAGGAGGAAACTGATCGTTGAGAAGTACAGCAGTATGGATGAGATCATGAG AGAATGCAATAGCATGGCCGGTCAGTTGGATGTATGGAAGCTTCTCGATGATGCACATGACTTGGTGGTCAACCTGCACGACAAGATTTAA
AA sequence Show only first row Show all	>Potri.003G146300.1 pacid=42784539 polypeptide=Potri.003G146300.1.p locus=Potri.003G146300 ID=Potri.003G146300.1.v4.1 annot-version=v4.1 MVLSNQKPGLLLPPSLKVISAISLLMLFSSSAGGGAFWKWIVFAEASTGNTGTGRNGWVVGGVGGGLWGAATSSSNVGIAIAVTAMAGIALAATVVYSRR GSLKSPWSRRRRKHALLPKQWKSLFMPDGKLCDGGVKFLKKARSGGVDPSIRPEVWPFLLGIYDVNSSKEERDCIQDEKRKEYENLRKQCRRHLRCNDRS FKAKQAVGISSAEVSGDSSQVMDFPGLEDVNSTRMTPSAEQGNLSAEDSDFPDEAPQGSESILEGGDDRSVVTYEDGLAGDTESTDSDSSEEPEIAESFL ATEFTGENDFDLPSQENSSPFETKSRLNLQKDEDFATWQRIIRVDAVRANGEWIMYSPSQAAVSEMKARRLAESVGLQDYDHLEPSRIFHAARLITILEA YALYDPEIGYCQGMSDLLSPIIAVMEEDFLAFWCFVGFMKKARHNFRLDEVGIRRQLGLVSKIIKCKDSHLYKHLEKLQAEDCFFVYRMVVVLFRRELNL DQTLCLWEVMWADQAAIRAGIAQSAWGRMRLRAPPSDDLLLYAIAACVLQRRKLIVEKYSSMDEIMRECNSMAGQLDVWKLLDDAHDLVVNLHDKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.003G146300 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.001G146200 [exp]	6.92	0.6514	PtpRR11
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	13.22	0.6833	POP2.2
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	15.96	0.7068
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	16.79	0.7249
					Potri.003G025032 [exp]	17.66	0.6902
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	18.00	0.7278
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	22.95	0.6599
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	29.18	0.6715
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	38.05	0.6742
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G077300 [exp]	41.15	0.6518

Compare expression of checked genes

Potri.003G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.