Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24130 211 / 4e-71 Protein of unknown function, DUF538 (.1) AT1G56580 130 / 3e-39 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 127 / 4e-38 Protein of unknown function, DUF538 (.1) AT1G09310 124 / 1e-36 Protein of unknown function, DUF538 (.1) AT5G49600 102 / 5e-28 Protein of unknown function, DUF538 (.1) AT1G30020 98 / 2e-26 Protein of unknown function, DUF538 (.1) AT4G02370 45 / 3e-06 Protein of unknown function, DUF538 (.1) AT1G02816 41 / 8e-05 Protein of unknown function, DUF538 (.1) AT1G61667 40 / 0.0002 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084200 [exp] 271 / 7e-95 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 148 / 5e-46 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 142 / 6e-44 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 130 / 2e-39 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 100 / 9e-28 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 100 / 2e-27 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 100 / 6e-27 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 89 / 2e-23 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 42 / 4e-05 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017330 [exp] 221 / 7e-75 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 216 / 4e-73 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 134 / 2e-40 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 132 / 5e-40 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 130 / 1e-38 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 129 / 3e-38 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 122 / 5e-36 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 111 / 6e-32 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 101 / 2e-27 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 101 / 1e-26 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.003G146400.1 pacid=42785855 polypeptide=Potri.003G146400.1.p locus=Potri.003G146400 ID=Potri.003G146400.1.v4.1 annot-version=v4.1 ATGGCAGGCTTGATCAGGTCGAAAGAAGATGAACGTGCAGGGGCAGAAATTGTGTATGGTCATGAAGAGTGTCATCGCCACTCCATAGAGCTTCTTGAAG AGCTAGGATTCCCTAAAGGTGTCCTCCCTCTGAAAGATCTTGAAGAGTGTGGGAGGGTTAAAGAAACCGGGTTTGTGTGGATGAAACAAAAGGCTCCTTA TGAGCACTTCTTTGTCGGATCCAACACAAAAGTAAGTTATGCCACAGAGGTGACTGCTTATGTAGAGAAGTTCAAGATGAAGAAAATGACTGGGATTAAG AGCAAGCAGATGTTCTTATGGGTACCATTATCTGAAATGAGCATCGAAAATCCTTCGCGCAAGAAAATTCTCTTCAAGACTCCAATGGGGATTGGCAAGT CTTTCCCTGTCTCTGCTTTCATGACTGACGAGGAGAAGCAGGAGCAGCAGGAAAAGCTGGAGGAAGTCCATGAATGA
AA sequence Show only first row Show all	>Potri.003G146400.1 pacid=42785855 polypeptide=Potri.003G146400.1.p locus=Potri.003G146400 ID=Potri.003G146400.1.v4.1 annot-version=v4.1 MAGLIRSKEDERAGAEIVYGHEECHRHSIELLEELGFPKGVLPLKDLEECGRVKETGFVWMKQKAPYEHFFVGSNTKVSYATEVTAYVEKFKMKKMTGIK SKQMFLWVPLSEMSIENPSRKKILFKTPMGIGKSFPVSAFMTDEEKQEQQEKLEEVHE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24130			Protein of unknown function, D...		Potri.003G146400 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.003G192900 [exp]	3.46	0.8599
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Potri.001G190800 [exp]	4.00	0.8562	Pt-PRO1.1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	14.07	0.8267
AT2G02850		ARPN	plantacyanin (.1)		Potri.002G074000 [exp]	17.88	0.7311
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	23.97	0.7619
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.012G118100 [exp]	26.98	0.7775
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	28.70	0.8254
AT3G02700			NC domain-containing protein-r...		Potri.004G078700 [exp]	28.98	0.7330
AT3G52790			peptidoglycan-binding LysM dom...		Potri.010G231000 [exp]	29.29	0.7941
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.007G130900 [exp]	32.61	0.6988

Compare expression of checked genes

Potri.003G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.