Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50790 511 / 0 esterase/lipase/thioesterase family protein (.1) AT5G49950 190 / 1e-54 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 172 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G03140 132 / 5e-33 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 195 / 2e-56 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 176 / 2e-49 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G136900 [exp] 139 / 2e-35 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001673 [exp] 538 / 0 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 437 / 5e-152 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10035744 [exp] 198 / 2e-57 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 192 / 2e-55 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 188 / 6e-54 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 187 / 2e-53 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 186 / 9e-53 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034894 [exp] 146 / 1e-37 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033426 [exp] 139 / 4e-35 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017327 [exp] 105 / 3e-27 AT3G50790 102 / 9e-27 esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.003G146500.1 pacid=42784780 polypeptide=Potri.003G146500.1.p locus=Potri.003G146500 ID=Potri.003G146500.1.v4.1 annot-version=v4.1 ATGGCCAAACTCTCTTTAACCCCCATATCCACACTCATCTCCCCAGTCCGCCGCCACCGTCCACCGCACTCCTCCCTCCAAACCACCGCCGCCGCCTCCG CCGCCGCCACCACCACCACCACCACCACCACCAACACCATGCCTGACCAACACACTCCCCACCCTTCCCTCGAGATAATCGGTGGCGCACGTGACCTCTT TCTCCCAGCCTTCAATTCCTTGCACCGTCCTTACACTCCTTTCCCTCTTCTCGGCAATAACTGTCACGTCGAAACCATTTTTGCTTCATTCTTTCGTGCC ACCCCTGATGCCAGGCTTAAACGTGAGTGCCTCCGTACAAAAGATGATGGTGCTGTCGCTCTTGATTGGGTCTCCGGTGACCACCAAATCTTGCCACCAA ATTCTCCTGTTCTCATTTTACTGCCAGGATTAACAGGAGGGAGTGGGGATTCATATGTAAGGCATATGTTAATTAAAGCAAGAAATAAAGGGTGGCGTGT TGTTGTTTTTAATAGCAGAGGATGTGGAAACAGCCCTGTCACTACTCCTCAGTTCTATTCGGCTTCGTTTATAGGAGATATGCATGAAGTGGTGGCACAT GTTGGGACTAGATATCCAAATGCTAATTTGTATGCTGTTGGGTGGTCTCTTGGTGCCAACATTCTTGTCAATTATTTGGCTCAGGAACCTCAAACAATAA CCGGGGCTGTATCATTGTGTAATCCTTTCAATTTGGTCATTGCAGATGAGGACTTCCGTAAGGGCTTTAATGTTGTTTATGACAAAGCTCTCACAAATGC TCTGCGTAAAATTCTTAAGAATCATGCTATTCTCTTTGAAGATATGGGTGGTGAATATAATATACCTTTGGCTGCCAATGCCAAGTCTGTCAGGGAGTTT GATGAAGGACTAACCCGAGTTTCATTTGGTTTCAAGTCGGTGGATGACTACTACTCTAATTCATGCAGTTCAGATTCCATAAAACACGTTCGCACACCTT TGCTTTGCATCCAGGCCGCCAATGATCCAATTGCTCCAGCCCGGGGAATTCCTTATGAAGATATCAAGGAAAATCCAAATTGTCTGCTCATCGTGACACC CAAAGGTGGCCATCTAGGGTGGATTGCTGGTAGTGAAGCTCCACTTGGGGCTCCTTGGACTGATACAATAGTGATGGATTTCCTAGAATATCTACAAAGT GGTGCATGTGAAGCCCCGGCATCGCATAGCGGCACAGAAGGCGTGCAACACTCTACCGAGGCCATGCATCACCTAAAATTATAG
AA sequence Show only first row Show all	>Potri.003G146500.1 pacid=42784780 polypeptide=Potri.003G146500.1.p locus=Potri.003G146500 ID=Potri.003G146500.1.v4.1 annot-version=v4.1 MAKLSLTPISTLISPVRRHRPPHSSLQTTAAASAAATTTTTTTTNTMPDQHTPHPSLEIIGGARDLFLPAFNSLHRPYTPFPLLGNNCHVETIFASFFRA TPDARLKRECLRTKDDGAVALDWVSGDHQILPPNSPVLILLPGLTGGSGDSYVRHMLIKARNKGWRVVVFNSRGCGNSPVTTPQFYSASFIGDMHEVVAH VGTRYPNANLYAVGWSLGANILVNYLAQEPQTITGAVSLCNPFNLVIADEDFRKGFNVVYDKALTNALRKILKNHAILFEDMGGEYNIPLAANAKSVREF DEGLTRVSFGFKSVDDYYSNSCSSDSIKHVRTPLLCIQAANDPIAPARGIPYEDIKENPNCLLIVTPKGGHLGWIAGSEAPLGAPWTDTIVMDFLEYLQS GACEAPASHSGTEGVQHSTEAMHHLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50790			esterase/lipase/thioesterase f...		Potri.003G146500 [exp]	0	1
AT1G52220			unknown protein		Potri.003G052200 [exp]	8.24	0.9333
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.001G087600 [exp]	21.07	0.9036
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Potri.006G122100 [exp]	29.58	0.9155
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	33.04	0.9247
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	50.73	0.9137
AT4G10000			Thioredoxin family protein (.1...		Potri.013G102000 [exp]	57.70	0.9124
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	59.09	0.9139
AT5G04710			Zn-dependent exopeptidases sup...		Potri.008G021700 [exp]	61.70	0.8846
AT2G33180			unknown protein		Potri.001G053700 [exp]	64.15	0.9130
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	73.48	0.9100

Compare expression of checked genes

Potri.003G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.