Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46660 658 / 0 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 656 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G01190 635 / 0 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G74110 493 / 2e-170 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT5G09970 465 / 9e-160 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT1G13710 464 / 1e-159 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G07990 271 / 2e-84 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G31940 240 / 1e-72 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT2G40890 238 / 7e-72 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31970 236 / 6e-71 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083900 [exp] 909 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.014G102700 [exp] 747 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 740 / 0 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G060900 [exp] 479 / 4e-165 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 479 / 4e-165 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 469 / 2e-161 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 461 / 4e-158 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.001G054800 [exp] 457 / 2e-156 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 455 / 7e-156 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017334 [exp] 688 / 0 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10005995 [exp] 664 / 0 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 664 / 0 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10001670 [exp] 602 / 0 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10036627 [exp] 459 / 4e-157 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 454 / 6e-155 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 444 / 3e-151 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 416 / 2e-141 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10020847 [exp] 262 / 4e-81 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 259 / 4e-80 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G146800.1 pacid=42786160 polypeptide=Potri.003G146800.1.p locus=Potri.003G146800 ID=Potri.003G146800.1.v4.1 annot-version=v4.1 ATGGAAACACAAATAGACAGCTTTTGGGTATTGGCTCTAGTTTCCAAATGCAAAGCCTTTTCCTCTCAAGACCCCATCTTCCTTCTTCTTTCTCTTTTCT TGGCTTGGCTAGCCATTGCTTTGTGCTACTGGGTTTACCCTGGAGGCCCCGCCTGGGGCAAATATTGGCTCAAAAGAGCAACCTGCTCGAAAGCCAAGAT GATTCCGGGACCTAGAGGGTTTCCAGTGATAGGAAGCATGAACCTCATGGTAAACTTGGCTCACCACAAGCTTGCTGCTGCAGCCAAGACTCTTAAAGCA AAAAGACTCATGGCTTTTAGCATGGGAGAGACTAGGGTTATTATCACATGCAATCCTGATGTAGCCAAAGACATCTTGAACAGTTCAGTATTTGCTGATC GTCCAGTTAAAGAGTCTGCCTATCAGCTCATGTTTAATAGAGCTATTGGTTTTGCTCCCTATGGGGTTTATTGGAGAACTCTAAGGAGAATTGCAGCAAC CCATCTTCTTTGTCCTAAACAAATCAGCTCTACAGAGCCACAGAGACTCGATATTGCTTCTCAAATGGTATCAGTAATGGCATGTCAAGGTGGAGATTAC TTTCGTGTTCGAGACATACTGAGGAAAGCTTCACTGAACAACATGATGTGCTCAGTTTTTGGTCGTAAATATGATCTAGGCACATCAAATAATGAAATTG AGGAACTTGGAGGACTTGTTGATGAAGGTTATGATCTTCTAGGGAAGCTTAACTGGTCTGATCATCTACCTTGGCTTGCAAATTTCGACCTTCAAAAAAT CAGGTTCAGGTGCTCCAATTTGGTTCCTAAAGTGAACCGGTTTGTGAACCGGGTTATTCAAGAACATAGAGAGGACCAAAGTGGCCAAAGAAGAAATGAC TTTGTTGATGTTCTGCTCTCTCTTCATGGACCGGACAAGTTATCAGACCATGACATGGTTGCTGTTCTTTGGGAGATGATTTTTAGAGGAACAGATACAG TGGCAGTTCTGATAGAGTGGATACTAGCCAGGATGATACTTCACCCTGATATCCAATCAAAGGTGCATGATGAGCTTGATCAAGTTGCGGGAAGATCAAG GCCGTTGATGGAAGCAGACATACGATCAATGGTTTACCTGCCGGCGGTTGTGAAAGAGGTTCTAAGGTTACACCCACCGGGGCCACTCTTGTCATGGGCG CGTTTAGCAATCACGGACACTGATGTTGATGGATATGATGTGCCAGCGGGGACCACAGCTATGGTTAATATGTGGGCCATAACAAGGGACCCGCAAGTTT GGGTGGACCCACTAAAGTTCTCGCCAGAGAGATTTTTGAGCAAGGAAGTCACTGCTGACGTGGAGTTCTCTGTGTCAGGGTCTGACCTCAGGCTGGCTCC ATTCGGGTCGGGTCGTAGGACTTGCCCGGGAAGGACACTGGGTTTGGCCACCGTTAGCTTCTGGGTTGGGAGTTTGTTGCATGAGTTTGAGTGGGCGCGG TGTGGCCATGAGCCGGTGGACCTCTCTGAAGTGTTGAGGTTGTCTTGTGAAATGGCCAAACCACTCACAGTCAAGGTGAATCCAAGGAGAAGATAA
AA sequence Show only first row Show all	>Potri.003G146800.1 pacid=42786160 polypeptide=Potri.003G146800.1.p locus=Potri.003G146800 ID=Potri.003G146800.1.v4.1 annot-version=v4.1 METQIDSFWVLALVSKCKAFSSQDPIFLLLSLFLAWLAIALCYWVYPGGPAWGKYWLKRATCSKAKMIPGPRGFPVIGSMNLMVNLAHHKLAAAAKTLKA KRLMAFSMGETRVIITCNPDVAKDILNSSVFADRPVKESAYQLMFNRAIGFAPYGVYWRTLRRIAATHLLCPKQISSTEPQRLDIASQMVSVMACQGGDY FRVRDILRKASLNNMMCSVFGRKYDLGTSNNEIEELGGLVDEGYDLLGKLNWSDHLPWLANFDLQKIRFRCSNLVPKVNRFVNRVIQEHREDQSGQRRND FVDVLLSLHGPDKLSDHDMVAVLWEMIFRGTDTVAVLIEWILARMILHPDIQSKVHDELDQVAGRSRPLMEADIRSMVYLPAVVKEVLRLHPPGPLLSWA RLAITDTDVDGYDVPAGTTAMVNMWAITRDPQVWVDPLKFSPERFLSKEVTADVEFSVSGSDLRLAPFGSGRRTCPGRTLGLATVSFWVGSLLHEFEWAR CGHEPVDLSEVLRLSCEMAKPLTVKVNPRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.003G146800 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.002G030000 [exp]	11.00	0.8278	PtrTrxh1
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.001G380100 [exp]	19.89	0.7977
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	20.68	0.8003
AT4G37840		HKL3	hexokinase-like 3 (.1)		Potri.007G009300 [exp]	26.43	0.7995
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	28.54	0.7907	AGL12.1
AT3G06240			F-box family protein (.1)		Potri.017G058900 [exp]	36.90	0.7866
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.014G074000 [exp]	39.24	0.7288
					Potri.013G013850 [exp]	42.04	0.7753
					Potri.003G217600 [exp]	47.13	0.7696
AT4G05050		UBQ11	ubiquitin 11 (.1.2.3.4)		Potri.006G045300 [exp]	51.67	0.7709

Compare expression of checked genes

Potri.003G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.