Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26665 273 / 6e-95 Mediator complex, subunit Med10 (.1.2) AT5G41910 254 / 3e-87 MED10A Mediator complex, subunit Med10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083801 [exp] 324 / 7e-115 AT1G26665 265 / 2e-91 Mediator complex, subunit Med10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024211 [exp] 285 / 2e-99 AT1G26665 270 / 1e-93 Mediator complex, subunit Med10 (.1.2) Lus10009896 [exp] 241 / 7e-75 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09748 [poplar] [flax] Med10 Transcription factor subunit Med10 of Mediator complex
Representative CDS sequence Show only first row Show all	>Potri.003G146900.1 pacid=42784863 polypeptide=Potri.003G146900.1.p locus=Potri.003G146900 ID=Potri.003G146900.1.v4.1 annot-version=v4.1 ATGGATTCGTCGCAGAATACAGTGTTGGGGAGTGGAGGTAATGGAATGTTGGCCACTCCATTGAATGATACAGCAGCAGCAGTGGATGATCCGAAGCAGA ATTTGAACCAAGTTATTGATTCCATACAGAAGACTCTTGGTCAACTCCATCAGCTTTACCTAACAGTCTCTTCATTCAACACTGCTTCACAGCTTCCTCT TCTACAGAGACTTAATGGTCTTGTTACCGAGCTGGACAATATGGTTAAATTGTCTGAAAGGTGCAACATTCAGGTTCCTATGGAGGTCTTGAATTTGATT GATGATGGGAAGAATCCAGATGAATTCACAAGGGGTGTTATAAACAGCTGCATCACAAAAAATCAAGTCACCAAAGGCAAAACTGATGGCTTCAAGAGTT TACGCAAGCATCTACTGGAGGAACTTGAACAGACTTTTCCAGATGAAGTTGAATCATACAGGGAGATACGTGCAATGTCTGCTGCTGAAGCAAAACGGCT TGCTCAATCACAAAGCTCATTACCCAACGGAGATGTGAAGGTAAAACCAGAGCATTAA
AA sequence Show only first row Show all	>Potri.003G146900.1 pacid=42784863 polypeptide=Potri.003G146900.1.p locus=Potri.003G146900 ID=Potri.003G146900.1.v4.1 annot-version=v4.1 MDSSQNTVLGSGGNGMLATPLNDTAAAVDDPKQNLNQVIDSIQKTLGQLHQLYLTVSSFNTASQLPLLQRLNGLVTELDNMVKLSERCNIQVPMEVLNLI DDGKNPDEFTRGVINSCITKNQVTKGKTDGFKSLRKHLLEELEQTFPDEVESYREIRAMSAAEAKRLAQSQSSLPNGDVKVKPEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	0	1
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	2.00	0.8656
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	2.00	0.8605
					Potri.001G142300 [exp]	3.31	0.8294
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Potri.003G051500 [exp]	4.00	0.8687	TED3.1
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	6.70	0.8470
AT1G01730			unknown protein		Potri.015G145000 [exp]	8.48	0.8315
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	9.89	0.8160	MBD905,Pt-MBD5.1
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	10.95	0.8088
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	12.96	0.8033	Pt-HDA9.2,HDA904
AT2G38610			RNA-binding KH domain-containi...		Potri.019G132100 [exp]	13.26	0.8117

Compare expression of checked genes

Potri.003G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.