Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24140 615 / 0 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 580 / 0 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 562 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G17780 324 / 8e-107 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 310 / 6e-101 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 53 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24160 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 48 / 8e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13820 47 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083400 [exp] 904 / 0 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 54 / 9e-08 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 54 / 2e-07 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G158800 [exp] 51 / 1e-06 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 50 / 2e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G134800 [exp] 47 / 1e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 45 / 8e-05 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 43 / 0.0003 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 43 / 0.0003 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033234 [exp] 712 / 0 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008266 [exp] 699 / 0 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013629 [exp] 318 / 7e-104 AT5G17780 430 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003871 [exp] 299 / 2e-96 AT5G17780 429 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 50 / 2e-06 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024310 [exp] 50 / 3e-06 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 47 / 3e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10031137 [exp] 45 / 0.0001 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10039814 [exp] 43 / 0.0003 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10003969 [exp] 42 / 0.0007 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.003G147400.2 pacid=42784515 polypeptide=Potri.003G147400.2.p locus=Potri.003G147400 ID=Potri.003G147400.2.v4.1 annot-version=v4.1 ATGCCTTCTAGTGAAATGGCTGTAATGGGAAAAACCATAATGATTTTAAGGCTAACAGGCAGGGTTTTACATGATGCAGTGAGCTTCATTGTCTTCTCTC TTCTAGACATCTTTGATCTTATTCTATGTTTTGCATTCAAAGCTGTGGACTTCATCATTGAAGCTGAATGGAAACCTTGTTATTGTACCTCAGCTAAAGA AGCCATCACTAGTAGCGGCAAGATCTTAGTCTCTGAACAAGGTGAGTCCAAGATTGTTTGCCTTACTTCTACCAAGTTAGGGTTAGAAGAGATCTCAGAC ACTCTTTACACTCGTCCTTCATTAGTGTCTGAGATTTCAAAATCAACCGTAAATGAGCTCAAGAGATTCAAGGTGGAGGATAAGTCCAGTACTGTCACTG TACAATCATCCGAGAAGAATATCAAGAAAGGAACTACGAGATCCACATTCACTGTTAACTCTACCATTGTTGGAATGCTTCGAGGGAAGATTGGAGGCCA GCAATTATATCCCACTTCAAGATGGTCTGATTGTGATTGCAAGTTTTGCACCTCGTGGACAACTTCTAGCAAAGAAACCCTCTTCGTTAGAGCTGAAGGA CCTAAAGATAAGGCAAAAGAAGATGTCCTCTTCGTTCATGGATTCATTTCATCTTCAGCATTTTGGACGGAAACATTATTTCCGAACTTCTCAAATGCAG CTAAATCAACCTACCGACTGTTTGCCATTGATCTACTAGGGTTTGGGAGGAGCCCTAAGCCAGCTGACTCCCTTTACACATTAAGAGAGCATCTGGACAT GATTGAACAATCCGTTCTTGAACCATACAAAGTCAAGTCCTTCCACATTGTTGCTCATTCTTTAGGCTGTATTTTGGCCCTGGCACTTGCCGTAAAACAC CCTGGCTCGGTCAAGTCCCTAACCCTCCTTGCACCGCCATATTACAAAGTACCAAAAGGTGTACCGGCAGCACAACATGTGATGAAACAAGTGGCTCCAA GGCGTGTGTGGCCACTAATTACGTTTGGTGCATCAATTGCGTGCTGGTATGAGCACATCACCAGAGCAGTTTGCCTTGTCATCTGCAAAAATCACCGGCT GTGGGAGTTTCTTACAAAACTAGTCACACGAAACAGGATGAAGACGTTCTTGATTGAGGGGTTCTTTTGCCACACCCACAACGCTGCATGGCATACCCTA CACAACATTATATGTGGCACCGGCAGCAAGCTTGATGGGTACTTGGATTCAGTCCGTGACCACCTCAAATGTGATGTCAATATCTTCCATGGCAAAAATG ATGAGCTTATCCCAGTTGAATGTAGCTACAATGTTCAGCAAAAAGTCCCTCGGGCTCAAGTTAAGGTGATCGACAACGAAGATCACATCACAATTGTTGT TAATAGACAGAAGGTCTTTGCTAGGGAACTTGAAGAAATCTGGAGGGGAGGAGACCGAGTGGTTAATTAA
AA sequence Show only first row Show all	>Potri.003G147400.2 pacid=42784515 polypeptide=Potri.003G147400.2.p locus=Potri.003G147400 ID=Potri.003G147400.2.v4.1 annot-version=v4.1 MPSSEMAVMGKTIMILRLTGRVLHDAVSFIVFSLLDIFDLILCFAFKAVDFIIEAEWKPCYCTSAKEAITSSGKILVSEQGESKIVCLTSTKLGLEEISD TLYTRPSLVSEISKSTVNELKRFKVEDKSSTVTVQSSEKNIKKGTTRSTFTVNSTIVGMLRGKIGGQQLYPTSRWSDCDCKFCTSWTTSSKETLFVRAEG PKDKAKEDVLFVHGFISSSAFWTETLFPNFSNAAKSTYRLFAIDLLGFGRSPKPADSLYTLREHLDMIEQSVLEPYKVKSFHIVAHSLGCILALALAVKH PGSVKSLTLLAPPYYKVPKGVPAAQHVMKQVAPRRVWPLITFGASIACWYEHITRAVCLVICKNHRLWEFLTKLVTRNRMKTFLIEGFFCHTHNAAWHTL HNIICGTGSKLDGYLDSVRDHLKCDVNIFHGKNDELIPVECSYNVQQKVPRAQVKVIDNEDHITIVVNRQKVFARELEEIWRGGDRVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	0	1
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	2.82	0.9374
AT2G31090			unknown protein		Potri.011G063900 [exp]	3.46	0.9478
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	4.00	0.9202
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	6.32	0.9174	8
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	6.70	0.9181
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	10.48	0.9038
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	10.95	0.9256
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	12.68	0.9239
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	13.07	0.9328
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	15.65	0.8873	Pt-CYP94.3

Compare expression of checked genes

Potri.003G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.