Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02800 432 / 2e-150 ATCEL2 cellulase 2 (.1) AT4G02290 419 / 7e-145 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G70710 380 / 9e-130 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 378 / 3e-129 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G22880 375 / 5e-129 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 368 / 3e-125 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G39010 353 / 3e-119 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 327 / 6e-109 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G09740 313 / 1e-103 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 308 / 5e-102 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083200 [exp] 639 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 441 / 2e-153 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 419 / 7e-145 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 384 / 2e-131 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 383 / 7e-131 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 378 / 7e-129 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 368 / 5e-125 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.019G069300 [exp] 362 / 5e-123 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G098800 [exp] 347 / 2e-116 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001666 [exp] 520 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10008208 [exp] 432 / 3e-150 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 412 / 3e-142 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10031090 [exp] 379 / 8e-131 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 378 / 7e-129 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10018077 [exp] 369 / 5e-125 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 365 / 7e-124 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10025880 [exp] 355 / 1e-120 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10034199 [exp] 350 / 3e-118 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10017525 [exp] 345 / 7e-116 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.003G147600.2 pacid=42784812 polypeptide=Potri.003G147600.2.p locus=Potri.003G147600 ID=Potri.003G147600.2.v4.1 annot-version=v4.1 ATGGATCACCGGTGCTGGGAGAGGCCAGAAGACATGGACACACCACGCAATGTGTACAAAGTAACCACGCAGAACCCAGGATCCGACGTGGCTGCTGAGA CAGCTGCTGCCTTGGCTGCAGCTTCAATTGTGTTCAAAAAGTCTGACCCTTCTTACTCCACCGAATTGCTTCATGCAGCAATGAAAGTATTCAATTTTGC AGACAGGTATAGAGGATCTTACAGCGACTCTCTCAATTCCGCAGTCTGCCCATTTTACTGCTCGTACTCTGGATACCAAGATGAGCTTCTCTGGGGTGCA TCGTGGCTTCATAAAGCCTCGCTGAATGGAACATACTTGGCTTACATCCAGTCAAATGGTCACACAATGGGTTCCGATGATGATGACTACTCCTTTAGTT GGGATGACAAGCGACCCGGGACTAAGATTCTCCTTTCAAAGGAATTCTTGGAGAAAACTACTGAAGAATTTCAGTTATATAAATCGCATTCAGACAACTA CATATGCTCTCTAATTCCAGGCACTTCTAGTTTCCAGGCCCAATACACTCCTGGGGGGCTTTATTATAAAGCAACCGAAAGCAATTTGCAATATGTAACC TCCACAACTTTCCTTCTATTGACGTATGCTAAGTATCTTGGCTCAAATGGAGGAGTTGCCAAATGCGGTGGTTCAACCGTGACAGCAGAGTCACTCATCG CTCAGGCGAAGAAGCAAGTGGACTATATCTTAGGTGATAATCCAGCAAAGATGTCTTACATGGTTGGATTCGGTAACAAGTATCCACAACATGTGCATCA CAGGGGTTCCTCGGTGCCATCTATACATGCACACCCGAACCGCATTTCCTGTAACGATGGGTTTCAGTACCTCTACTCCAGCTCTCCCAACCCGAATGTC CTTGTTGGAGCCATAGTAGGCGGTCCTGATAACAGAGACCATTTCGCTGATGATCGAAACAGCTATCAGCAATCCGAGCCAGCTACATATATCAATGCAC CATTTGTTGGCGCTCTTGCTTTCTTCTCAGCCAAAAACTAA
AA sequence Show only first row Show all	>Potri.003G147600.2 pacid=42784812 polypeptide=Potri.003G147600.2.p locus=Potri.003G147600 ID=Potri.003G147600.2.v4.1 annot-version=v4.1 MDHRCWERPEDMDTPRNVYKVTTQNPGSDVAAETAAALAAASIVFKKSDPSYSTELLHAAMKVFNFADRYRGSYSDSLNSAVCPFYCSYSGYQDELLWGA SWLHKASLNGTYLAYIQSNGHTMGSDDDDYSFSWDDKRPGTKILLSKEFLEKTTEEFQLYKSHSDNYICSLIPGTSSFQAQYTPGGLYYKATESNLQYVT STTFLLLTYAKYLGSNGGVAKCGGSTVTAESLIAQAKKQVDYILGDNPAKMSYMVGFGNKYPQHVHHRGSSVPSIHAHPNRISCNDGFQYLYSSSPNPNV LVGAIVGGPDNRDHFADDRNSYQQSEPATYINAPFVGALAFFSAKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02800		ATCEL2	cellulase 2 (.1)		Potri.003G147600 [exp]	0	1
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	80.96	0.8285
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G064700 [exp]	183.82	0.7706
AT2G03810			18S pre-ribosomal assembly pro...		Potri.015G048400 [exp]	229.12	0.7824
AT1G54820			Protein kinase superfamily pro...		Potri.013G025700 [exp]	254.41	0.7759
AT3G16070			unknown protein		Potri.001G182500 [exp]	264.00	0.7673
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	264.06	0.7563
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.015G088400 [exp]	265.20	0.7636
					Potri.016G139350 [exp]	271.63	0.7605

Compare expression of checked genes

Potri.003G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.