Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42090 640 / 0 Lung seven transmembrane receptor family protein (.1) AT3G09570 392 / 8e-134 Lung seven transmembrane receptor family protein (.1) AT5G18520 390 / 6e-133 Lung seven transmembrane receptor family protein (.1) AT5G02630 311 / 3e-102 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083100 [exp] 742 / 0 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 390 / 3e-133 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G081300 [exp] 389 / 1e-132 AT5G18520 609 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.013G049500 [exp] 365 / 6e-123 AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 42 / 0.001 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008267 [exp] 660 / 0 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10033235 [exp] 477 / 2e-169 AT5G42090 520 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025283 [exp] 383 / 9e-130 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 332 / 7e-110 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1) Lus10009065 [exp] 327 / 9e-109 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF10192 [poplar] [flax] GpcrRhopsn4 Rhodopsin-like GPCR transmembrane domain
Representative CDS sequence Show only first row Show all	>Potri.003G147700.2 pacid=42785039 polypeptide=Potri.003G147700.2.p locus=Potri.003G147700 ID=Potri.003G147700.2.v4.1 annot-version=v4.1 ATGGCTACTCGCTTCACCCTCTTCTCCCTTTTCACTTCTCTTCTACTCTCCCTCTCCCTCGCCGAGATCCGTTTCTCCGATATCCGATCCGATGACCGTC AAATTATCCCTTTCGACGAATTCGGGTTCACCCACTTCGGCCGACTCGAACTCAACGTCACAAACATCCGCCTCTCTAACCCTAACCCGGATCTCGACCG ATCCAAAATCGGATTCTTTCTCTGCACTCGTGATTCCTGGCTTCACGTTATTAACCAACTCGAAGATGGTGAAATCGCGTGCGCTCTCCAATCGGATCTT ATCAAGCCCGTTTTCACTTTCAACGACCTCAAGAAAGACCATGACAGCCTCTCCAAAATTGTAACTCAAAACGACGCCGATCAGTACACGCTTGTGTTCG CCAATTGCTTGACGTCGTTGAAAGTCTCCATGGACGTCAAGTCGGTCATGTATAATCTCGATAGAGGCGGTAAAGTTCGTGACTATTTGTCGGCGGGAAA AACTATTTTGCCGCGGGTTTATTACTTATTGTCGCTGATTTATTTCGGTTTAGTTGGTGTTTGGATTTATGTTTTATATAGGAAACGGCTTACTGTTTAT CGAATTCATTTCTTCATGCTTGCTGTGGTAATCTTAAAGACAGTGAATTTGTTATGCGAAGCTGAGGATAAGAGTTACATTAAGAGAACGGGTTATGCCC ATGGATGGGATGTTTTGTTTTACATTTTCAGTTTTTTGAAGGGGATTACGTTGTTTACTTTGATTGTTTTGATTGGTACTGGGTGGTCGTTTTTGAAACC GTATTTACAAGATAAAGAAAAGAAGGTTTTGATGATTGTGATTCCATTACAAGTTGTTGCCAATATTGCCCAAGTTGTTATTGATGAGACTGGACCGTAT GGGCAGGATTGGATTACATGGAAACAAGTGTTCTTGCTGGTTGATGTTGTTTGTTGTTGCGCTGTTTTGTTTCCGATTGTTTGGTCCATTAAGAATTTGA GGGAGGCTGCAAGGACGGATGGAAAGGCGGCGGTGAATTTGATGAAGCTGACTCTGTTTAGGCAGTATTATATTGTGGTGATTTGTTATATTTACTTTAC AAGGGTTGTGGTTTATGCGTTGGAGACAATTACTTCATATAAGTATTTATGGACGAGCGTGGTGGCTGGAGAATTGGCTACTTTGGCATTTTATGTCTTT ACTGGGTATAAGTTTAAGCCAGAAGCACATAATCCTTATTTTGTTGTGGATGATGAAGAGGAAGAGGCTGCAGCTGAGGCTTTGAAGCTAGAAGATGAGT TCGAGCTGTGA
AA sequence Show only first row Show all	>Potri.003G147700.2 pacid=42785039 polypeptide=Potri.003G147700.2.p locus=Potri.003G147700 ID=Potri.003G147700.2.v4.1 annot-version=v4.1 MATRFTLFSLFTSLLLSLSLAEIRFSDIRSDDRQIIPFDEFGFTHFGRLELNVTNIRLSNPNPDLDRSKIGFFLCTRDSWLHVINQLEDGEIACALQSDL IKPVFTFNDLKKDHDSLSKIVTQNDADQYTLVFANCLTSLKVSMDVKSVMYNLDRGGKVRDYLSAGKTILPRVYYLLSLIYFGLVGVWIYVLYRKRLTVY RIHFFMLAVVILKTVNLLCEAEDKSYIKRTGYAHGWDVLFYIFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPY GQDWITWKQVFLLVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVF TGYKFKPEAHNPYFVVDDEEEEAAAEALKLEDEFEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42090			Lung seven transmembrane recep...		Potri.003G147700 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Potri.002G228900 [exp]	4.58	0.9229
AT3G16760			Tetratricopeptide repeat (TPR)...		Potri.010G007000 [exp]	6.24	0.8989
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	9.74	0.9113
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	10.09	0.9213	Pt-FLA14.7
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	11.40	0.9039
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	11.83	0.9162
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	11.95	0.9032
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	12.00	0.9182
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.002G085300 [exp]	14.00	0.8982
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	20.14	0.9084

Compare expression of checked genes

Potri.003G147700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.