Plant FIBer expression Database

Potri.003G147900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64690 66 / 2e-12 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
AT3G11590 48 / 4e-06 unknown protein
AT3G20350 46 / 1e-05 unknown protein
AT1G50660 45 / 3e-05 unknown protein
AT5G22310 42 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G082600
[exp]
380 / 2e-133 AT1G64690 79 / 1e-16 BRANCHLESS TRICHOMES, branchless trichome (.1)
Potri.004G199500
[exp]
49 / 1e-06 AT3G11590 399 / 6e-131 unknown protein
Potri.011G090100
[exp]
49 / 2e-06 AT1G50660 689 / 0.0 unknown protein
Potri.006G207800
[exp]
47 / 7e-06 AT3G11590 582 / 0.0 unknown protein
Potri.009G160900
[exp]
47 / 1e-05 AT3G11590 399 / 9e-132 unknown protein
Potri.016G074300
[exp]
47 / 1e-05 AT3G11590 560 / 0.0 unknown protein
Potri.004G015800
[exp]
43 / 0.0001 AT1G50660 390 / 1e-126 unknown protein
Potri.011G003200
[exp]
41 / 0.0009 AT1G50660 350 / 1e-110 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017339
[exp]
141 / 2e-41 AT1G64690 105 / 2e-27 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10001665
[exp]
140 / 1e-40 AT1G64690 109 / 9e-29 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10005316
[exp]
76 / 1e-17 AT1G64690 45 / 8e-07 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10040076
[exp]
62 / 1e-10 AT1G50660 756 / 0.0 unknown protein
Lus10021521
[exp]
62 / 1e-10 AT1G50660 750 / 0.0 unknown protein
Lus10043111
[exp]
55 / 3e-08 AT1G50660 616 / 0.0 unknown protein
Lus10032637
[exp]
53 / 1e-07 AT1G50660 625 / 0.0 unknown protein
Lus10005200
[exp]
41 / 0.001 AT3G11590 322 / 1e-101 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G147900.1 pacid=42785203 polypeptide=Potri.003G147900.1.p locus=Potri.003G147900 ID=Potri.003G147900.1.v4.1 annot-version=v4.1
ATGGACACTGAGCTAGATTTCGCTCGAGCCCGGATCCTGGAATTGAAAGCTGAACTTGAATATGAACGTAAGGCACGAAAGAAGTTGGAGACTATGAGTA
AAAGACTGGCTAAAGAATTGGCTGAAGAAAGAAGAGGAAGGGAAGCACTTGAGAGAGTTTGCGAAGAGCTTGCTAGAGAAATCTCTTCTGATAAAGAGGA
GATTGATCACATGAAAAGAGAAATGGGAGAGGAAAGAGAGATGATAAGAATGGCTGAGGTCTTAAGAGAAGAAAGAGTTCAAATGAAGCTTGCAGAGGCG
AAAATGCTCTTTGAAGAGAAGTTGTTAGAATTGGTAGGAACAACTACACAGGCAGAGCCTCACCAGAATTCAACTTCCAGAATGGAACAGAAGAGTCAAG
AAGATAAAGAACCTGAAATCGCAACTCCTTTAAAGACTACAGCTATTTTGTCGGGCCAGTTAAACAGGTTAGTTTTGGGTGAGAAATCCTGTTATGACAA
CAGTGAATCGACAGGGGCGATCTTGAGTGAAAAGCCATCATTTAATGACAACACTAGTAGCATTTCATCAATGGTAATTCAGAGAAGCAGAGCATCACCA
GAACCTGAGAATCCTCACATCAAGAGAGGGATGAAGGGGTTTGTCGAATTCCCTAGAGTGGTTCGAGCAATAGGGTCCAAAAACAAGCATCGGGGCACAA
AGTTGGAGTGTCAAAAGGCACAGCTAAGGATTCTATTGAAACAAAAAAGCCCCATCAGATCCAATAATCTTATTGTTTCGTAA
AA sequence
>Potri.003G147900.1 pacid=42785203 polypeptide=Potri.003G147900.1.p locus=Potri.003G147900 ID=Potri.003G147900.1.v4.1 annot-version=v4.1
MDTELDFARARILELKAELEYERKARKKLETMSKRLAKELAEERRGREALERVCEELAREISSDKEEIDHMKREMGEEREMIRMAEVLREERVQMKLAEA
KMLFEEKLLELVGTTTQAEPHQNSTSRMEQKSQEDKEPEIATPLKTTAILSGQLNRLVLGEKSCYDNSESTGAILSEKPSFNDNTSSISSMVIQRSRASP
EPENPHIKRGMKGFVEFPRVVRAIGSKNKHRGTKLECQKAQLRILLKQKSPIRSNNLIVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Potri.003G147900
[exp]
0 1
AT5G01850 Protein kinase superfamily pro... Potri.016G134900
[exp]
5.74 0.7839
AT2G23450 Protein kinase superfamily pro... Potri.005G130900
[exp]
8.12 0.7820
AT4G36850 PQ-loop repeat family protein ... Potri.007G031800
[exp]
8.77 0.7311
AT5G20950 Glycosyl hydrolase family prot... Potri.019G037400
[exp]
12.72 0.7749
AT1G35560 TCP TCP23 TCP family transcription facto... Potri.013G110700
[exp]
13.41 0.7620
AT1G76680 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOAT... Potri.003G004600
[exp]
24.97 0.7720
AT4G05160 AMP-dependent synthetase and l... Potri.017G112800
[exp]
25.80 0.7598
AT5G22540 Plant protein of unknown funct... Potri.004G187100
[exp]
26.58 0.7572
AT5G39360 EDL2 EID1-like 2 (.1) Potri.017G090300
[exp]
27.65 0.6724
AT3G61550 RING/U-box superfamily protein... Potri.014G091000
[exp]
27.85 0.7507

Potri.003G147900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.