Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38970 475 / 2e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 469 / 5e-157 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 463 / 2e-154 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 444 / 8e-148 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 188 / 1e-50 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 168 / 4e-44 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 166 / 5e-43 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 127 / 3e-30 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT4G38140 42 / 0.0003 RING/U-box superfamily protein (.1) AT2G01150 42 / 0.0004 RHA2B RING-H2 finger protein 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082150 [exp] 993 / 0 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 493 / 8e-166 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 492 / 2e-165 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 483 / 4e-162 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 168 / 8e-44 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 147 / 1e-37 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 140 / 3e-35 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.019G091400 [exp] 42 / 0.0007 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.004G209600 [exp] 40 / 0.0008 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023527 [exp] 489 / 1e-164 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 486 / 4e-163 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 478 / 1e-160 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 477 / 5e-160 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 454 / 2e-150 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 156 / 5e-40 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 129 / 1e-32 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 127 / 2e-30 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 109 / 4e-26 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 89 / 4e-20 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF00092 [poplar] [flax] VWA von Willebrand factor type A domain CL0128 [poplar] [flax] PF14624 [poplar] [flax] Vwaint VWA / Hh protein intein-like CL0229 [poplar] [flax] RING PF17123 [poplar] [flax] zf-RING_11 RING-like zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G148400.1 pacid=42787185 polypeptide=Potri.003G148400.1.p locus=Potri.003G148400 ID=Potri.003G148400.1.v4.1 annot-version=v4.1 ATGGCTTCTAGTGCATGGCGCAAGCTCAAAAAAGCCCTCAAGTCAAAGCTCTCTTTTCTCTCCAACTCCACCCGTACCCCGATCCCCACCCCCACCAATC CCACAACCTTCACCACCGAAAATGCCCGCTTCACCACCGCCACTCCACCACCAGTCCCAACATCATCATCTTCTTCGTTCAGTGCTCGTCTCTCTCGTAG CTTCAGTCTCCACTCTTCTTCTAAAAAATGTGCCATTTGCTTGAGGAGTCTGAGAAAAGGGCAAGGCCAAGCCATCTTCTATGCTGAGTGTTCTCACCCT TTCCACTTCAATTGCATTGCTGACAATACCAAGCATGGAAATCTCAAATGTCCTATTTGCCGTTCAAAATGGAAAGATGTGCCTTTTCAAGCGCCAAGAA ATGCCCCCAATTTTCAACGTGCCGGTTCATTGCATGCTCATGTATCTCCTTACAATGTTCCACCAGTTCAAATTGAGGCGGAACACTTCTCAGATGATGA AGTACTCTCAGATGTCTCTCCAGATCAATCCCTTTCGTCTCGACCCCATGCTATAACTGTGAAGACTTTTACAGAATATCCTGCTGTTTCTGCGTCAGAA TCCTTCTCCAACTTTGGTGTTCTTGTCCGTATTCTCGCACCACCACTTGATAATACTCTCCCTCATCACCGTGCGCGTGCACCAATTGATGTTGTAACCG TGTTGGATGTTAGCGGTAGCATGGCAAGCAAGCTGATACTTCTCAAGCGTGCGGTCAACTTTATCATACAAAACTTAGGCCCTTCTGATCGACTTTCGAT CGTGACTTTCTCTTCATCAGCTCGAAGAATGTTACCACTTAGGAGAATGTCTGGAAGTGGCCGTGAAGATGCCACAAGCGTTGTCGACTCTATTTCTGCA ATTGGTGGAACTAATATCGTTGCAGGGCTCAAGAAAGGGGTTCAGGTTCTTGAAGAACGGCGTCAACATAATTCAGTTGCAACCATTATCCTCTTATCTG ATGGCTGTGATACACAAAGTCACAATGCGCAGAATAGATTGGATTATCTAAAGTTCCTACCTACTTCAATCTTTCCTAACAATAATACATCTAGAGAGGA GTCTAAGCAGCCAACTTTCCCAGTTTACACATTTGGGTTTGGATCGGATCATGATTCTGCTGCAATGCATGCTATATCTGATGCATCCCGCGGCACATTT TCCTTCATTGAGTCAATTAACATTTTACAAGATGCTTTTGCAAGATGCATTGGTGGTCTTATAAGTATTGTGGCTCGGGACGTTCAACTCAAAGTTAGGT CAGCATCACCAGGAGTGCAAATTCTGTCAACACCTTCTGGGAGACACAAGAATAAGATTTTTGACCAAGGACACCAAGCTGTGATTGATATTGGAGACTT GTATGCAGAAGAGGAGAAGGAATTTTTGGTGTTCCTCTCAATTCCTGTATCCTCAGCTGTTGATGGTGAGGAAAGATTGGAAAACACATCATTGGTGGAA GTTTCGTGCTTCCACAAAGGTTCGGTGTCAGTGGATACAGTCCAGGTAGAAGGTGAGAGAGTTGAGATTCGACGACCTCCAACTTTATCTCCAATTGATC GGGTGCTGTGTTTGGAGGTTGATAGGCAAAGAAATCGTTTGCTAGTGACAGAAACTATTGCCAAGACACAAAGGATGGCTGAAATGGGAGATTTAAAGGG TGCACAGGCCCTGCTGGCAAAGCAACTATCCACTCTTCTAACTACAGCTTCTTCCCAAGCAGGAGATGATCTATGTAATCAGCTCGAAGCTGAGCTGAAA GAAACTAGGGAGAGAATGGAAACTAGGGAGTTATATGAACGGTCGGGGCGCGCATATGTTCTCTCGGGAATGAGTTCTCATTCATGGCAAAGGGCTGCAA CTAGGGGTCACTCCACAACAATTCTATCACAAGGTGGGAACTCAGATACAAGTTTTACCACTAGCTATGAAACACCATCTATGACTAGCATGGTATTGAA GTCACAGATTCTCAACTTAGCACCCAGAGAGTAG
AA sequence Show only first row Show all	>Potri.003G148400.1 pacid=42787185 polypeptide=Potri.003G148400.1.p locus=Potri.003G148400 ID=Potri.003G148400.1.v4.1 annot-version=v4.1 MASSAWRKLKKALKSKLSFLSNSTRTPIPTPTNPTTFTTENARFTTATPPPVPTSSSSSFSARLSRSFSLHSSSKKCAICLRSLRKGQGQAIFYAECSHP FHFNCIADNTKHGNLKCPICRSKWKDVPFQAPRNAPNFQRAGSLHAHVSPYNVPPVQIEAEHFSDDEVLSDVSPDQSLSSRPHAITVKTFTEYPAVSASE SFSNFGVLVRILAPPLDNTLPHHRARAPIDVVTVLDVSGSMASKLILLKRAVNFIIQNLGPSDRLSIVTFSSSARRMLPLRRMSGSGREDATSVVDSISA IGGTNIVAGLKKGVQVLEERRQHNSVATIILLSDGCDTQSHNAQNRLDYLKFLPTSIFPNNNTSREESKQPTFPVYTFGFGSDHDSAAMHAISDASRGTF SFIESINILQDAFARCIGGLISIVARDVQLKVRSASPGVQILSTPSGRHKNKIFDQGHQAVIDIGDLYAEEEKEFLVFLSIPVSSAVDGEERLENTSLVE VSCFHKGSVSVDTVQVEGERVEIRRPPTLSPIDRVLCLEVDRQRNRLLVTETIAKTQRMAEMGDLKGAQALLAKQLSTLLTTASSQAGDDLCNQLEAELK ETRERMETRELYERSGRAYVLSGMSSHSWQRAATRGHSTTILSQGGNSDTSFTTSYETPSMTSMVLKSQILNLAPRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.003G148400 [exp]	0	1
AT3G59880			unknown protein		Potri.017G002100 [exp]	2.23	0.8378
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	5.47	0.7965
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	7.54	0.8210	LON.1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	12.00	0.7812	Pt-SULTR3.5
AT4G30790			unknown protein		Potri.018G103000 [exp]	12.08	0.8301
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	20.24	0.7872
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	20.29	0.8039
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	20.37	0.7986
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	26.15	0.7380
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.010G188500 [exp]	28.56	0.7640

Compare expression of checked genes

Potri.003G148400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.