Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 73 / 2e-15 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 142 / 2e-39 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000639 [exp] 0 / 1 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10000285 [exp] 0 / 1 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10023155 [exp] 0 / 1 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G148501.1 pacid=42785766 polypeptide=Potri.003G148501.1.p locus=Potri.003G148501 ID=Potri.003G148501.1.v4.1 annot-version=v4.1 ATGAGAAACAGTGCTTACCGATCAGCTTATGCTAAAGCAGATGAGGCATCAAAATCACTTCGACTAGAGCAAACTCCTCAAACTAAAGAGGAGGAAGAGG AAAGTCTAGTGTTTGCGGATGATGATGATGATCTTTATAAGGCATTGGAAAGAACAAGGAAACTAGCTCTTAAAAAGCAAGAGGCAGAAGCATCTAGTCC TAAAGCAATTGCTCTCCTTGCCACCTCCACTTTGTGCAGTCAAATTGCAGATGATCAGAACCCTGAAATTGGAGAGTCACTAGAAAAAAACTTGTCTTCA CTGAGATGGAAGAGTTTGTCTCAGCTATCCATCTTGCTGAAGAAGTTCATAAGACTGATAATGAAGATGTTTTCATGGACAAAGATGAACCGCCAAGAGC TTCTGATGAAGAACAAAAGGACGAGGCTGGTGGATGGATGGAAGTTCAAGACAGTGGTAAAGATGAAAACCCTGTCAACGAGGATGAGTAGACAGTTCCT GATGAAACCATACATGAGGTTGCTGTTGGGAAAGGATTATCTGGTGCTTTGA
AA sequence Show only first row Show all	>Potri.003G148501.1 pacid=42785766 polypeptide=Potri.003G148501.1.p locus=Potri.003G148501 ID=Potri.003G148501.1.v4.1 annot-version=v4.1 MRNSAYRSAYAKADEASKSLRLEQTPQTKEEEEESLVFADDDDDLYKALERTRKLALKKQEAEASSPKAIALLATSTLCSQIADDQNPEIGESLEKNLSS LRWKSLSQLSILLKKFIRLIMKMFSWTKMNRQELLMKNKRTRLVDGWKFKTVVKMKTLSTRMSRQFLMKPYMRLLLGKDYLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	1.00	0.8636
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	1.73	0.8556
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	3.46	0.8544
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	3.87	0.8429
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G271200 [exp]	6.48	0.8415
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	7.74	0.7878
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	8.77	0.8347
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	9.16	0.7758
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	10.24	0.8099
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	10.48	0.8281

Compare expression of checked genes

Potri.003G148501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.