Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22860 1144 / 0 Vacuolar sorting protein 39 (.1) AT4G36630 48 / 5e-05 EMB2754 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G081900 [exp] 1709 / 0 AT1G22860 1120 / 0.0 Vacuolar sorting protein 39 (.1) Potri.005G123000 [exp] 53 / 1e-06 AT4G36630 1382 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012758 [exp] 247 / 1e-74 AT1G22860 241 / 4e-73 Vacuolar sorting protein 39 (.1) Lus10026018 [exp] 47 / 9e-05 AT4G36630 1347 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Lus10014310 [exp] 47 / 0.0001 AT4G36630 1352 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00780 [poplar] [flax] CNH CNH domain
Representative CDS sequence Show only first row Show all	>Potri.003G148700.1 pacid=42786615 polypeptide=Potri.003G148700.1.p locus=Potri.003G148700 ID=Potri.003G148700.1.v4.1 annot-version=v4.1 ATGGCTACTACTAACACCGATCCTACGACCACCCGAACTGTCCTTGAACCACTTCTCACCTTCGATCCCACCCTTCACTCTCATACTTCAATAAAATCCA TTGCAACGAATTCTCAATCTTTCATTTACCTAGGCACTTCTTCTGGTTCCCTTCTCTTGCTCTCCATAAACCCAGATACCCCAAATGACAAAACCCCCTC CACCAAAGATCCGAACTCGACTTTGGATTTTGATGTTCCTTCTCGAAACGTCTCGTTCATAAAATCCGTTTCTGTTGGTGACTCGGCTGTAGAAACGGTT CTTTTGCTTGATGAGACTGGAAAGGTTATTGTTCTCTCTGATGGATTTTTGTTCTTGACGGATTCGGGCTTGGTTCAACCCGTTAGGAAACTGGGGTTTT TGAAAGGGGTTTCTTTTATCACTAAGAGAGTTAAGAGTAGTGAATCGGAGTGTAGTGATTTACTCGGTTTAAGTAGTTTGGAGGGTGCGAGTACGAGTTC TCGAATTTTGAGCAGATTAGGAGGTGGAGTTAGAGCTAATGGGGTTAAAGATTTTGTGCAAAAAATTGAGGGTGATTATGTTTTTGCTGCTGTGGTTGGT AAAAAATTGATGTTAATAGAGCTTAGAGTTGGGAAGAATGACAAGGAAGTTGATTTGATGGTTTTGAAAGAAATGCAGTGTATTGACGGGGTTAAGACAT TAGTTTGGATCAATGATTCCATAATTGTTGGCACTGTCATCGGGTATAGTTTGTTTTCGTGCATTACGGGCCAAAGTGGGGTGATTTTTACATTGCCTGA TGTGTCTTGTTTGCCATTGCTCAAGTTGTTGTGGAAAGAAAAGAAGGTGTTGTTGTTGGTGGATAATGTTGGGATTGTTGTTGATGCGCATGGGCAGCCA GTTGGAGGGAGTTTGGTGTTTCGTAAGGGTCCAGATTCTGTTGGGGAGTTGGCTTCTTATGTAATGGTTGTGAGGGATGGGAAGATGGAGTTGTATCATA AGAAATTGGGTGGTTGTGTACAGACTGTTAGTTTTGGTAGTGAAGGATTTGGGCCATGTATTGTTGCGGATGAGGAAAGTGGAAATGGGAAACTTGTTGC TGTTGCGACGCCCACCAAGGTTATTTTCTACCGGAGAGTACCTACTGAAGAACAAATCAAAGATCTGTTGAGAAAGAAAAACTTTAAGGAAGCCGTCTCC TTGGTGGAGGAGCTTAAGAGCGATGGTGAAATATCTAATGAAATGCTATCCTTCGTTCATGCTCAAATAGGGTTCCTGCTGCTTTTTGACTTGCATTTCG AGGAAGCAGTTAACCACTTTCTGCAGTCAGAGACAATGCAACCTTCTGAAGTTTTTCCATTTATAATGCGAGACCCAAATCGCTGGTCACTGCTGGTTCC TAGGAACCGATACTGGGGTTTGCATCCTCCCCCTGCTCCTCTTGAAGATGTTGTAGATGATGGGTTGATGGCTATCCAAAGAGCTATTTTCCTTAAAAAG GCAGGTGTAGATACTACAGTCGATGAAGATTTTCTTTTGAATCCACCAACTAGAGCTGATTTACTTGAGTTGGCAATAAAAAATATGAGCAGATATCTTG AGGTTTCTCGTGAAAAAGAATTGACTTTGTCAGTGAAAGAGGGAGTTGACACACTTCTAATGTACCTCTATAGAGCCCTAAACCGCATTGATGATATGGA AAAGCTTGCATCTTCTGGAAACAGCTGTATCGTGGAGGAGTTAGAAACCCTGTTAGATGAATCTGGGCATTTACGGACTCTCGCCTTCTTATATGCAAGT AAAGGGATGAGCTCAAAGGCTCTTACCATATGGCGCATTTTGGCAAAAAATTATTCTTCTGGTCTATGGAAAGATCCTGCTCGGGAGCATGAGTTTCTGG ATGGCAATACAAATGTTATTTCTGGCAGAGAGGTTGCTGCAACTGAGGCATCAAAAATTCTTGAGGAGCTGTCTGATCAGGATTTGGTTTTGCAACATCT TGGATGGATTGCAGATGTTAACCCATTACTCACAGTTCAAGTTTTGACATCAGAGAAAAGAGTAGACCAGCTTTCACCAGATGAAATAATTGCTGCCATT GATCCAAAAAAGGTTGAAATTCTCCAAAGGTATCTCCAATGGTTGATTGAAGATCAAGACTCTGGTGACACACAGTTCCACACGCTATACGCGCTCTCAC TTGCAAAGTCAGCAATTGAAACCTTTGAAGTGCAAAGTACCTCCCAGGAACCTGATGATGGAAGGCTGGAGGAAACAAAAATTTCTGATCCTGGAGGAAA CTCAATCTTTCAAAGTCCTGTACGAGAAAGGTTGCAGATATTCTTACAGTCATCAGACTTGTATGATCCGGAAGATGTTCTTGACTTGATTGAGGGATCA GAGCTTTGGCTGGAAAAGGCGATTCTATACAGAAAATTAGGGCAAGAGACTTTGGTGCTGCAAATTTTGGCCTTGAAGCTGGAGGACAGTGAAGCTGCTG AACAGTATTGTGCAGAGATTGGAAGACCAGATGCCTATATGCAGTTACTTGATATGTATTTGGATCCACAAAATGGTAAAGAGCCCATGTTTAACGCTGC CGTTCGACTTCTGCATAATCATGGAGAATTACTGGATCCTTTGCAAGTTCTAGAGACACTGTCCCCAGATATGCCCCTCCAACTTGCCTCAGATACAATA CTAAGAATGTTGAGGGCTCGGCTTCACCATCATCGCCAAGGACAAATTGTTCATAATCTGTCCCGTGCTCTAAATGTTGACGCAAAACTTGCAAGATTGG AGGAAAGATCGCGGCATGTACAGATAAATGATGAGAGCCTTTGTGATTCTTGTCATGCCCGGTTAGGAACCAAACTGTTTGCAATGTACCCAGATGACAC TGTTGTTTGTTACAAGTGTTTCCGTCGACTGGGAGAGTCCACTTCTGTCACAGGTCATGACTTCAAGCGAGATCCACTGATCAAGCCAGGTTGGCTTGTG ACACGCTAA
AA sequence Show only first row Show all	>Potri.003G148700.1 pacid=42786615 polypeptide=Potri.003G148700.1.p locus=Potri.003G148700 ID=Potri.003G148700.1.v4.1 annot-version=v4.1 MATTNTDPTTTRTVLEPLLTFDPTLHSHTSIKSIATNSQSFIYLGTSSGSLLLLSINPDTPNDKTPSTKDPNSTLDFDVPSRNVSFIKSVSVGDSAVETV LLLDETGKVIVLSDGFLFLTDSGLVQPVRKLGFLKGVSFITKRVKSSESECSDLLGLSSLEGASTSSRILSRLGGGVRANGVKDFVQKIEGDYVFAAVVG KKLMLIELRVGKNDKEVDLMVLKEMQCIDGVKTLVWINDSIIVGTVIGYSLFSCITGQSGVIFTLPDVSCLPLLKLLWKEKKVLLLVDNVGIVVDAHGQP VGGSLVFRKGPDSVGELASYVMVVRDGKMELYHKKLGGCVQTVSFGSEGFGPCIVADEESGNGKLVAVATPTKVIFYRRVPTEEQIKDLLRKKNFKEAVS LVEELKSDGEISNEMLSFVHAQIGFLLLFDLHFEEAVNHFLQSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVVDDGLMAIQRAIFLKK AGVDTTVDEDFLLNPPTRADLLELAIKNMSRYLEVSREKELTLSVKEGVDTLLMYLYRALNRIDDMEKLASSGNSCIVEELETLLDESGHLRTLAFLYAS KGMSSKALTIWRILAKNYSSGLWKDPAREHEFLDGNTNVISGREVAATEASKILEELSDQDLVLQHLGWIADVNPLLTVQVLTSEKRVDQLSPDEIIAAI DPKKVEILQRYLQWLIEDQDSGDTQFHTLYALSLAKSAIETFEVQSTSQEPDDGRLEETKISDPGGNSIFQSPVRERLQIFLQSSDLYDPEDVLDLIEGS ELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQNGKEPMFNAAVRLLHNHGELLDPLQVLETLSPDMPLQLASDTI LRMLRARLHHHRQGQIVHNLSRALNVDAKLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTVVCYKCFRRLGESTSVTGHDFKRDPLIKPGWLV TR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22860			Vacuolar sorting protein 39 (....		Potri.003G148700 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Potri.009G003500 [exp]	8.48	0.7680
AT1G02890			AAA-type ATPase family protein...		Potri.014G131000 [exp]	9.79	0.7779
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	11.83	0.8007
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	15.00	0.7965
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	17.54	0.7881
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.004G078866 [exp]	22.84	0.6969
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	23.21	0.7656
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	27.12	0.7316
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	27.22	0.7124
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	30.24	0.7820

Compare expression of checked genes

Potri.003G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.