Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31330 177 / 5e-57 PSAF photosystem I subunit F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G081500 [exp] 228 / 4e-77 AT1G31330 304 / 7e-106 photosystem I subunit F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040639 [exp] 176 / 2e-56 AT1G31330 338 / 4e-119 photosystem I subunit F (.1) Lus10018273 [exp] 175 / 5e-55 AT1G31330 341 / 4e-119 photosystem I subunit F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02507 [poplar] [flax] PSI_PsaF Photosystem I reaction centre subunit III
Representative CDS sequence Show only first row Show all	>Potri.003G148900.2 pacid=42786875 polypeptide=Potri.003G148900.2.p locus=Potri.003G148900 ID=Potri.003G148900.2.v4.1 annot-version=v4.1 ATGTTGAAGCCAAAACTTGGGGTTTCTCAGGTGACCCCAACAAAACCAAGATCCATGATTGTATGTTCAGCATCACAAACTCCATCAACAGAAGGGAAAT CATCATCACCACTCCAAGCATTCTCTGCTGCACTCGCGCTCTCTTCCATCCTCTTCTTATCAGCTCCACTACCAGCTGTTGCTGATATCTCCGGCCTAAC CCCATGCAAAGAGTCCAAACAATTTGCCAAACGTGAGAAACAGCAGATTAAAAAGCTAGAATCTTCCCTCAAACTTTATGCACCTGACAGTGCACCTGCT TTGGCTATCAAAGCTACAATTGAGAAGACAGAAAGAAGATTTGACAACTATGGGAAACAAGGGTTGCTATGCGGGTCAGATGGGCTGCCTCATTTGATAG TGAGTGGTGACCAAAGGCATTGGGGAGAGTTTATTACACCGGGGGTTTAG
AA sequence Show only first row Show all	>Potri.003G148900.2 pacid=42786875 polypeptide=Potri.003G148900.2.p locus=Potri.003G148900 ID=Potri.003G148900.2.v4.1 annot-version=v4.1 MLKPKLGVSQVTPTKPRSMIVCSASQTPSTEGKSSSPLQAFSAALALSSILFLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPA LAIKATIEKTERRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.003G148900 [exp]	0	1
AT1G29430			SAUR-like auxin-responsive pro...		Potri.009G141251 [exp]	3.16	0.9332
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	6.63	0.9416
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Potri.002G179500 [exp]	10.39	0.8894
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Potri.005G209100 [exp]	12.96	0.8928
AT3G07120			RING/U-box superfamily protein...		Potri.002G243800 [exp]	13.78	0.8425
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	18.57	0.8993
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	19.13	0.9200
AT5G02160			unknown protein		Potri.006G087701 [exp]	21.21	0.9048
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	23.15	0.9124
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.015G039100 [exp]	27.11	0.9111

Compare expression of checked genes

Potri.003G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.