Plant FIBer expression Database

Potri.003G149300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62660 44 / 0.0001 GATL7 galacturonosyltransferase-like 7 (.1)
AT3G28340 42 / 0.0007 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G081100
[exp]
601 / 0 AT3G06260 46 / 2e-05 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Potri.008G116900
[exp]
47 / 1e-05 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1)
Potri.010G129400
[exp]
43 / 0.0003 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1)
Potri.008G018100
[exp]
43 / 0.0003 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Potri.014G125000
[exp]
42 / 0.0006 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1)
Potri.002G200200
[exp]
41 / 0.0009 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000262
[exp]
44 / 0.0001 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1)
Lus10010025
[exp]
44 / 0.0002 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info
Representative CDS sequence
>Potri.003G149300.1 pacid=42785589 polypeptide=Potri.003G149300.1.p locus=Potri.003G149300 ID=Potri.003G149300.1.v4.1 annot-version=v4.1
ATGTCTTCCTCGTTCTTGCCATCGACATCTTTTGCAACTCAAAGAAGAACATCCCAGAAATTAGGAAACCCAAAATCTGCCGGACCCCTTGATCCGTGTA
TAACTCCTGCTCCAAATCCCAGACCCATCTTTCAGTTTCTAGCTTTTGGATTGATTATATTCCTCGCCTTGCTTCAGTTACTACCTGCCACTCATTTTCG
AGACCCATTCGACCCTTTTAGAAACTGGGCTCCTCTCCATTCTAATCCTTCTTCTCCATTGAGAGAGTTTAGGGATGCAAGAAATGGTGATGGAGGTGGA
GATGATGGAATGGTGCATGTTGTTTCATGGATGGATTGTTTAGACCTCAGAGCTCTTGCGGTTCTGGCAAATTCAACTCTGTCAAGCTCAAGCCATCCAG
ATTTGGTTTTCTTTCATTTCTTTATTCCTGGAGGGAATGAAGACAAAGTGTCTTTCTATAAGCTGAAGGTCTTGTTTCCACATTCAAACCTTGAAATTCA
TGGGCAAGAGCAGGTTAAAGAAATAATGAGGACTGTTTTTTCTGGGGGACAATATGCTGAACCCAGTTATGAGGAAATAGTACCTTTTATCATACCCACC
GTGCACAATTTCTTGAGAAAATTCATATACGTCTCAGCGAATGTAATTATGAAGGCTAGAGTTGAAGAACTAATTGGAGTTGACTTGAACAACTATGCCA
TAGCAACAGCTGAAGACTGCTCCCGAAGATTAAAAAATTATGTGAATTTAGATGTGTTGGATGCTATTCAGAGATCGGCTTCAAAGGCATGGGTATCTGA
GACACCTTATGCTAAGGATTTTTGTTTGCCAGACTTCAGCGTACTAGTTATTAATGCGAGGAAATTAGAAAAAGATTTTGTCGAGATCGTCTTATGGTGG
AGCAAAGCTCTGAATTTGAGGGAAAGGACCAATAAAAAAAATGTAGCCGTTGCATTAGCACTCTACAATAGTTATCTCAAGCTTTCTTCATCTTGGCTGG
TCAAGGATTTCTCATCATCCCAAGTTAACAACAGTATGATTATCCACTACGATGGGCCCAAGACTAGTTGTAAGGAATCCATCAATGGTACTGCCTCGGA
ATACAGTCATGGCAATGTCTGGACTCGGTACCTTCCTTCAACCTCAGATCGAATCTTGGGCAGCTAG
AA sequence
>Potri.003G149300.1 pacid=42785589 polypeptide=Potri.003G149300.1.p locus=Potri.003G149300 ID=Potri.003G149300.1.v4.1 annot-version=v4.1
MSSSFLPSTSFATQRRTSQKLGNPKSAGPLDPCITPAPNPRPIFQFLAFGLIIFLALLQLLPATHFRDPFDPFRNWAPLHSNPSSPLREFRDARNGDGGG
DDGMVHVVSWMDCLDLRALAVLANSTLSSSSHPDLVFFHFFIPGGNEDKVSFYKLKVLFPHSNLEIHGQEQVKEIMRTVFSGGQYAEPSYEEIVPFIIPT
VHNFLRKFIYVSANVIMKARVEELIGVDLNNYAIATAEDCSRRLKNYVNLDVLDAIQRSASKAWVSETPYAKDFCLPDFSVLVINARKLEKDFVEIVLWW
SKALNLRERTNKKNVAVALALYNSYLKLSSSWLVKDFSSSQVNNSMIIHYDGPKTSCKESINGTASEYSHGNVWTRYLPSTSDRILGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G149300
[exp]
0 1
AT1G16180 Serinc-domain containing serin... Potri.001G038100
[exp]
3.16 0.8861
AT5G15080 Protein kinase superfamily pro... Potri.010G033800
[exp]
3.46 0.8955
Potri.009G001301
[exp]
4.89 0.8863
AT5G10240 ASN3 asparagine synthetase 3 (.1.2) Potri.005G075700
[exp]
5.47 0.8610
AT5G54110 ATMAMI membrane-associated mannitol-i... Potri.001G408200
[exp]
6.00 0.8889
AT2G41900 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type ... Potri.001G266700
[exp]
7.21 0.8663
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.005G130800
[exp]
9.79 0.8679
AT1G77360 Tetratricopeptide repeat (TPR)... Potri.003G045800
[exp]
10.58 0.8710
AT1G10020 Protein of unknown function (D... Potri.002G112600
[exp]
11.22 0.8351
AT3G52430 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICI... Potri.007G100600
[exp]
11.53 0.8725

Potri.003G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.