Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19610 646 / 0 nucleotide binding;nucleic acid binding;RNA binding (.1) AT5G08695 556 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G05720 115 / 7e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 79 / 5e-15 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G20030 71 / 6e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G09880 71 / 1e-12 Splicing factor, CC1-like (.1) AT2G23350 71 / 3e-12 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G71770 70 / 6e-12 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G36660 69 / 6e-12 PAB7 poly(A) binding protein 7 (.1) AT5G61030 66 / 4e-11 GR-RBP3 glycine-rich RNA-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G081000 [exp] 222 / 4e-68 AT4G19610 105 / 3e-27 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.004G177000 [exp] 78 / 1e-14 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 77 / 3e-14 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.014G025400 [exp] 76 / 5e-14 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.005G148100 [exp] 76 / 7e-14 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 74 / 3e-13 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.008G172100 [exp] 69 / 2e-12 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G124200 [exp] 69 / 9e-12 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.005G198500 [exp] 69 / 9e-12 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018277 [exp] 901 / 0 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 827 / 0 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10000826 [exp] 78 / 2e-14 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10002093 [exp] 78 / 2e-14 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10027886 [exp] 76 / 1e-13 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 76 / 1e-13 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 74 / 2e-13 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10010202 [exp] 72 / 2e-12 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10010042 [exp] 72 / 2e-12 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10013306 [exp] 66 / 2e-12 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.003G149600.1 pacid=42784506 polypeptide=Potri.003G149600.1.p locus=Potri.003G149600 ID=Potri.003G149600.1.v4.1 annot-version=v4.1 ATGTCAAGAATATGCGTGAAGAACTTACCAAAATATGTAGCAGAGGATAGATTGAGAGAATATTTTTCACAGAAAGGAGAAGTTACTGATGCTAAGATTA TGAGAACTGCAGATGGTAAGAGCAGGCAATTTGCTTTTGTTGGGTTCCGGACAGAGCGTGAAGCTGAAGACGCTATCAAATACTTCAATAAATCTTATCT TGATACTTGTAGAATTGTTTGTGAGATTGCTCGTAAAGTTGGGGACCCGGATATTCCTCGACCATGGAGTAGGTATTCTAAACAGAAAGAAGAGAAATTG AGTGAAGATGAGAATAATGTTACTGGTTCCAAAAGCTTAGACGTCAAGGGAGCTAAAGATGAGAAGAAGAAGAACAAGGATAATGAAAAGGGCAATGAGA TTGATGATCCTCGATTACAAGAATTTCTTCAGGTCATGCAGCCACGTGCCAAGTCGAAATTATGGGAAAATGACTCTATAGTTTCTCACACGGCTGATAT AAATGGTGAAGTTGGCAAGAAGGGAAGTCAAGGAAAGAAAGAAGGCAAGGAGAAGTTGGTTCCAGTGGAAGTTGAGATAGATAAAGGCAATAGCGATACA GATGAAGAGTCAAATGATCCTGCACGTGATGAGGCTGTTTCAGATATGGATTACTTCAGGAGTAGAGTGAAGAAAGAATTGTCAGATTCTGAAAGTGAAA GTGGTGGAAGTGATGATGACGATGACGACGACAAGAACGACAACTGTAATGACAAAGATGAAGACAGTGATTTGTCTAATGAAAGCCTTCAGAGGGGGAA TGTAGCACAAGCAGAGGTTGCTGAAGATACCCATGCTGAAGACCATGAGAACCCATCTTCAACTTTAAAAGATGAGAAAGAGGAAATTCTTGAGACTTGT CGTCTTTTTGTCCGCAATCTGCCATATACAGCAATTGAGGATGAGCTGGAAGAGCATTTCAGCAAATTTGGTAACATTTCACAGGTCCATCTTGTTGTTG ATAAAGATACAAAACGTTCCAAGGGACTTGCATACATTCACTACACACTTCCAGAGTCTGCAGCAAGGGCATTGGAAGAATTAGACAATTCAATTTTTCA GGGCAGATTATTGCATGTCATGCCTGCAAAACAAAAAATCCTATCAAACAAGCAAGAGACCAGTGATCTCCTGAGCCAAGGTTCAAACACTTTGAAGCAG CGGAGACAGGAAGAAAAGAAGGCAGCTGAAGCCAGTGGAGATACAAGAGCATGGAATAGTTTTTTCTTCCACCATGATACAGTCATTGAAAACATTGCTA GGAGACATGGTGTGAGTAAGAGTGACTTACTTGACCGCGAAGCAGATGATCTTGCTGTACGTGTTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACGAA AAAGGCGCTCACAAATGCTGGTGTCAACATTACAGCTTTAGAGGAAATTGCTGCAGGGAAAAAAGATGGCATGAAAAGAAGTAACCATGTTCTTTTAGTA AAGAACTTGCCATATGGCTCTTCTGAGGTTGAACTAGCTGAGAAATTTGGGAAATTCGGGAGTTTGGACAAAATTATTCTCCCTCCAACAAAAACATTGG CCCTGGTTGTGTTCCTTGAACCATCTGAAGCCCGTGCTGCTTTCAAAGGTTTAGCATACAAGCAGTACAAGGGTGTTCCATTATATTTGGAGTGGGCTCC AGCCAATATCCTTAGTCAAAGCTCAACCTCCAAGAGTGATGAAAAAAGTGATGCAGCTGTGGGTGAACATGATGCCAAGAGGGTGATACTGGAGCAAAGT GTGGAAGGAATATCTGAAATGGATATTGATCCTGACAGAATCGAGTCGCGATCTTTATTTGTCAAGAACCTGAATTTCAAGACGGCTGATGAAAGTTTGA AAAAGCACTTTAGTGAACACATGAAAGAAGGGAGAATCCAAAGTGTCAGGATAAAGAAGCACATGAAAAAAGGGAAGAATGTTTCAATGGGTTTTGGCTT TATAGAGTTTGATTCCGTGGAAACAGCTACAAATATCTGCAGAGATCTACAGGGAACTGTTTTGGATGGTCATGCTCTTATTTTGCAACTCTGCCATGCC AAGAAGGATGAGCATTCAGTGAAAAAGGCTGGAAAGGATAAGAGTTCCACAAAACTACTTGTCAGAAATGTAGCTTTTGAGGCAACAGAGAAAGATCTGA GACAGCTATTTGGTCCATTTGGCCAGATTAAGAGCTTACGGTTGCCAATGAAGTTTGGAAACCACAGAGGCTTTGCATTTGTGGAATACGTCACAAAGCA AGAGGCACAGAACGCACTTCAAGCACTCTCAAGCACCCATCTGTATGGTCGGCACCTGGTTTTGGAGAGAGCGAAGGAAGGTGAGAGCTTGGAAGAATTA CGGGCTCGCACAGCTGCTCAGTTTACTGACGAGCAAAATGGTCTCCAGAATCCAGCCAAGTTATCCAAAAAGAGGAAGGATATCACAATGTTGGATGAAG GAAGCATGAAGTTTCAGAGGGTAACAGATTAG
AA sequence Show only first row Show all	>Potri.003G149600.1 pacid=42784506 polypeptide=Potri.003G149600.1.p locus=Potri.003G149600 ID=Potri.003G149600.1.v4.1 annot-version=v4.1 MSRICVKNLPKYVAEDRLREYFSQKGEVTDAKIMRTADGKSRQFAFVGFRTEREAEDAIKYFNKSYLDTCRIVCEIARKVGDPDIPRPWSRYSKQKEEKL SEDENNVTGSKSLDVKGAKDEKKKNKDNEKGNEIDDPRLQEFLQVMQPRAKSKLWENDSIVSHTADINGEVGKKGSQGKKEGKEKLVPVEVEIDKGNSDT DEESNDPARDEAVSDMDYFRSRVKKELSDSESESGGSDDDDDDDKNDNCNDKDEDSDLSNESLQRGNVAQAEVAEDTHAEDHENPSSTLKDEKEEILETC RLFVRNLPYTAIEDELEEHFSKFGNISQVHLVVDKDTKRSKGLAYIHYTLPESAARALEELDNSIFQGRLLHVMPAKQKILSNKQETSDLLSQGSNTLKQ RRQEEKKAAEASGDTRAWNSFFFHHDTVIENIARRHGVSKSDLLDREADDLAVRVALGETQVIAETKKALTNAGVNITALEEIAAGKKDGMKRSNHVLLV KNLPYGSSEVELAEKFGKFGSLDKIILPPTKTLALVVFLEPSEARAAFKGLAYKQYKGVPLYLEWAPANILSQSSTSKSDEKSDAAVGEHDAKRVILEQS VEGISEMDIDPDRIESRSLFVKNLNFKTADESLKKHFSEHMKEGRIQSVRIKKHMKKGKNVSMGFGFIEFDSVETATNICRDLQGTVLDGHALILQLCHA KKDEHSVKKAGKDKSSTKLLVRNVAFEATEKDLRQLFGPFGQIKSLRLPMKFGNHRGFAFVEYVTKQEAQNALQALSSTHLYGRHLVLERAKEGESLEEL RARTAAQFTDEQNGLQNPAKLSKKRKDITMLDEGSMKFQRVTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19610			nucleotide binding;nucleic aci...		Potri.003G149600 [exp]	0	1
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	2.23	0.8423
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	7.93	0.8168
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	11.74	0.8310
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.003G066200 [exp]	12.48	0.7853	Pt-PSD.2
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	14.86	0.7802	XRN4.1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	15.49	0.7837
AT5G06350			ARM repeat superfamily protein...		Potri.001G208900 [exp]	15.68	0.8036
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	22.27	0.7827
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	23.95	0.7843
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	28.98	0.8106

Compare expression of checked genes

Potri.003G149600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.