Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43000 245 / 1e-80 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 229 / 4e-74 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 218 / 4e-69 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 207 / 5e-64 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G61110 171 / 4e-51 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G02450 172 / 7e-51 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT3G04070 168 / 7e-50 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT4G36160 166 / 1e-48 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT3G15500 163 / 4e-48 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT5G08790 162 / 4e-48 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080900 [exp] 502 / 0 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 284 / 2e-95 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.002G057200 [exp] 281 / 2e-94 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 263 / 5e-87 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G066300 [exp] 259 / 9e-86 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.017G082000 [exp] 229 / 6e-73 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 226 / 1e-71 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.019G083600 [exp] 172 / 2e-51 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.011G046700 [exp] 171 / 8e-51 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038332 [exp] 249 / 4e-82 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10036194 [exp] 246 / 1e-80 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031189 [exp] 239 / 3e-77 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 227 / 1e-71 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031767 [exp] 218 / 1e-70 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10036749 [exp] 221 / 4e-69 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 220 / 3e-68 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10015367 [exp] 216 / 4e-68 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 212 / 1e-66 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10030446 [exp] 174 / 7e-53 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.003G149700.1 pacid=42784655 polypeptide=Potri.003G149700.1.p locus=Potri.003G149700 ID=Potri.003G149700.1.v4.1 annot-version=v4.1 ATGGAGTTGGATAGGTTGATTACTACTTCAAAGGATGTTGAAGCAGATGATGATGATATCATGGCCCCTGGGTTTCGGTTTCATCCTACGGACGAAGAGC TTGTAGGATTTTATCTTAAAAGGAAAGTAGAGAAGAGACTTATCAGGATTGATCTCATCAAACACATTGATGTCTACAAATACGAGCCATGGGATCTTCC AAAAGAAGCTAGCTGTAGTGCTGGAGAAAGGGAGTGGTACTTCTTCTGTAGAAGAGGAAGAAAGTACAAGAACAGCGTAAGACCTAATAGGGTCACAAAT TCTGGATTTTGGAAAGCTACAGGTATCGACAAGCCAATATATTCTGTCGGGAAACTCCATTACTGCATTGGCCTGAAAAAATCTCTAGTCTATTACCGAG GAAGTGCCGGAAAAGGCACGAAAACAGACTGGATGATGCACGAATTTCGCCTTCCTGCTAGTGAAAATACTGCCAATCTCACCAATCCTGACGACTGTAA TATTCATGAAGCAGAAGTTTGGACTCTTTGTCGAATATTCCAGCGAGAAACTCCCTTTAACAAAAAATGCTTCTCTTCAAAACAGAAGTATGTTAGTGAT TCAAGTTCTAGCCCTTGTGAATCAGACAATCGTAGGCATACTGATGAAACCTTCGAAGTCTCAGCAGTTGATAATAATGTAAACATTGAAAGTAGAGCTA CCAGTGATCATCAATATACCTATGGAAATAATGACCAGTTGTTTGCAGCCCAGCTGAGCTTAAGAAATCAAGTTCCATTTACAACACCATATCTAAGCTT TTCCAGTCAAAACGGAGACCAACTTTTTGGAGATGAGAACTGGGATGAGCTCAGACCAATGGTTGAGTTTGCTCTTGACCCATCAATGCTATATAGTATT AATTAG
AA sequence Show only first row Show all	>Potri.003G149700.1 pacid=42784655 polypeptide=Potri.003G149700.1.p locus=Potri.003G149700 ID=Potri.003G149700.1.v4.1 annot-version=v4.1 MELDRLITTSKDVEADDDDIMAPGFRFHPTDEELVGFYLKRKVEKRLIRIDLIKHIDVYKYEPWDLPKEASCSAGEREWYFFCRRGRKYKNSVRPNRVTN SGFWKATGIDKPIYSVGKLHYCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPASENTANLTNPDDCNIHEAEVWTLCRIFQRETPFNKKCFSSKQKYVSD SSSSPCESDNRRHTDETFEVSAVDNNVNIESRATSDHQYTYGNNDQLFAAQLSLRNQVPFTTPYLSFSSQNGDQLFGDENWDELRPMVEFALDPSMLYSI N

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.003G149700 [exp]	0	1
AT4G20800			FAD-binding Berberine family p...		Potri.011G155900 [exp]	2.44	0.9586
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033400 [exp]	4.12	0.9644
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033550 [exp]	4.58	0.9487
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033600 [exp]	4.69	0.9602
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033500 [exp]	9.16	0.9487
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G109100 [exp]	10.58	0.9484
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451300 [exp]	14.69	0.9386
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G096500 [exp]	18.76	0.9388
					Potri.015G034182 [exp]	25.78	0.9516
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Potri.005G052800 [exp]	26.49	0.9284	ACCAL.4

Compare expression of checked genes

Potri.003G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.