Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 504 / 1e-161 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 448 / 2e-140 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 441 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 431 / 9e-134 EFR EF-TU receptor (.1) AT3G47110 414 / 1e-127 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 389 / 3e-116 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 381 / 6e-114 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 379 / 7e-113 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 365 / 2e-109 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 362 / 9e-108 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150100 [exp] 1546 / 0 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068500 [exp] 758 / 0 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G029900 [exp] 742 / 0 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150050 [exp] 483 / 1e-163 AT3G47570 131 / 3e-34 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 505 / 2e-161 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 499 / 2e-159 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 492 / 2e-156 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 491 / 2e-156 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 489 / 1e-155 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033384 [exp] 476 / 1e-150 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 468 / 2e-147 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 468 / 2e-146 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 464 / 2e-146 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 464 / 4e-146 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 463 / 9e-146 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 461 / 9e-145 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 461 / 1e-144 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 455 / 2e-142 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 453 / 5e-142 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G150000.3 pacid=42786380 polypeptide=Potri.003G150000.3.p locus=Potri.003G150000 ID=Potri.003G150000.3.v4.1 annot-version=v4.1 ATGAAGGGAACTTGCTTTCTTAATTTCATTCCAACTTTTTTGTTCCTAGTTTCCATGGCTTACAGTGCAATGGAAGTAACTAATGTTACAGCCGATCAAA CTGCTCTTCTAGCTCTTAAAGCCCATCTTACTGACCCTCATAACATCTTGCCAAACAACTGGTCCACCACTGCCTCTGTATGCAGCTGGATTGGTGTCAC TTGTGGTGCTCAGCGCGACCGAGTGAGTGGCTTGAATCTTTCTCACATGAGTCTTTCTGGCTACATCCCTTCAGAGATTGGAAACCTTTCATTCCTCTCT TTCCTATCCATTAGAAACAACAATTTCCAAGGATCCCTGCCTAATGAGTTAGCTCGCTTGCTTCACCTGGAGTATCTTGACTTTGGATTCAACTCATTCA CCGGAGACATTCCTCCAAGCTTAGGTTCCTTGCCTAAACTCAAAAGCTTGCTGCTAGAAGCCAACTTTTTCTTAGGCAATTTACCATTATCATTATGGAA TATATCCTCATTGCAAACAATCAATATCAGTTACAACCAGCTTCATGGTTTCATGCCCTCCAGCATCTTCAGCAGGTCTTCACTGTATACAATTGATCTA AGTTTCAATCACCTATCGGGTGAAATCCCAGCGGATATTTTCAATCATCTCCCCGAATTACGAGGGATCTATTTCTCCAGGAATCGACTCAGTGGAAGCA TTCCAAGAACTATTGGGAACTGTACATTGATTGAGGAGATAAATTTCAGTGAAAACAACTTGACAGGTGTATTACCACCTGAATTGGGTGGCCTTTCCAA CCTGAAAACATTGAGAATGGACGACAATGCTTTAATTGGCAATGTTCCATCCGCGCTCTTCAATATATCGGCAATTGAAGTTATTGGGATGTATACAAAT TTGCTTTCAGGGAGTCTTCCTCCAACCATGGGCCTTTTCATGCCGAACCTAAGGGAGCTTCGTCTAGGGGGAAATGAACTCGAGGGAACAATTCCTAGCT CCATCTCCAATGCATCTACTCTCGCTGTCGTGGACTTATCCAACAATTCATTTACTGGTCTTATTCCTGGGACAATTGGTAACCTGAGACAACTTCAAGT GCTCAATCTAGCCAACAATCATTTGACGAGCGAGTCTTCTACACCACAGTTAAGTATTCTCTCTGCATTGGGAAATTGCAAGAATCTGAGAAGGATATAT TTTTCAGTTAATCCCCTCAATACCACCCTTCCAATTTCCTTTGGAAATCTCTCTTCCTCACTTGAACAGTTTTGGGCAGACGATTGCAACCTTAAGGGCA ACATTCCTAATACAATCGGCAATTTAAGCAGCCTGATAGCTTTGAGCTTGGCAAACAACGAACTGGCCAGTGTAGTTCCAACTACAACTGAAAGATTGAC AAATCTCCAACTTTTGGATCTCCAAGGTAATCAACTAGAGGGAAATATCACAGATAACCTTTGCCACTCGGACAGCTTGTTTGACTTATCCTTGGGTGGT AATAAGCTTTCCGGATCTATCCCTGAATGCTTGGGTAATCTGACAACTTTAAGACATCTCAACTTAAGCTCCAATAACTTCACTTCCACAATACCCTTGT CCTTGGGGAACCTTGCGGGTATTTTGGTTCTCAACCTGTCGTCAAACTTTCTCAGCGGGTCTCTCCCGTTGGTATTCAGACAACTGATGGTCGCGGAAGA AATTGATTTGTCAAGGAATCAGTTATCAGGTCAAATTCCAAACAGCACATGGTTCCATAAGAATCTAGCTTATCTCTCCTTGGCTACAAATAGATTGCAA GGTCCTATTCCTGGGTCTCTTAGTTTTGCAGTAAGCTTGGAGTTCTTGGATCTCTCTCATAACAGTCTTTCTGGACTTATTCCCAAGTCCTTAGAGACAC TCTTGCATCTCAAATATTTTAATGTGTCTTTCAATGTACTACAGGGAGAAATTCCTAGTGAGGGACCTTTCAGAAACTTCTCAGCTCAGTCATACATGAT GAACAATGAACTTTGCGGTGCACCACGCCTAAAAGTTCCACCTTGCAAAACTTATGCTCTCCGAGGATCAACAGTAACCCTCGTGTTCCTTCTGGAACTG ATTTTACCATTAATTGCAGCTACAATGGCAGCATTATTCATATTCATATGGTTAAGATGCCCAAACAAGAATGTTCGTCCGAACCTGGTCAGTACAAGGT TTACATACCGAGACCTTGAGCAAGCAACAGATGGATTTGGTGAAGGCAATCTCCTTGGGAGGGGGAGTTTTGGTTCAGTATACAAAGGAACACTTAGTGA TGGGAAGATTGTCGCAATAAAGGTTTTCGATGCTGAAAATGAAGTTTGTTGTAGGAGTTTTGAAGTTGAGCGTGAAGTGATGTGCAATGCCTGTCATCCC AATATCATCACAATTTTTTGCAGCTCTAATGCTGTTAATTTTAAAGCCTTAGTAATAGAGTACATGGTTAATGGGAGCCTCGACAAGTGGCTTTATACTC ACAACTACAGTCTGGATATCCTACAAAGACTCGACATAATGATAAACACTGCATCAGCCTTAGAATACCTTCATTCTGGTTGTTCAAGGATTATTATTCA TGGTGATTTAAAGCCCAGCAACATCCTGCTAGATGAAGATATGATTTCACGTTTGAGTGATTTTAGCATTTCCCAGTTCTTAAAACCAGATGGTCAACAG AATTCTTCAGGACCAAGCCTCTTTCTTGGCACAATTGGATATGTGGCACCAGAATACGGTATTCATGGAATTGTTTCGAAAGAAACAGATGTGTACAGTT TCGGTATTTTGTTGATGGAAACTTTCACAGGGAAGAAGCCGACGGATGAAATGTTTGGAGGAGAAATGAGCTTGAGAAGTTGGATCATTGAGACATTACC CCGTGAAATAGAAAGAGTGGTTGATCCTTGTTTATTACAGAATGAGGAAGAATACTTCCATGCTAAAACCACATGTTTATCGGATATTATGAGATTGGCT CTGATGTGCACTTCAGAGTCACCCGTTGAGAGGTTAAATATGAAAGTAGTAGTAGACACACTTGATGAGATCAAACGATTGTTTCTCAGGAATATCTCTG GAGACAACCCTGGTGAGTCCAATTTGGAAGAGTTAGATCCGAATCGCATTAGAAATAACATGAAAAAGTTCGTGAAATGGAGGAGGGAAACCCTGTTGCC TAATCTGGAGTGGCGTTTGCCTGATTACCAATACGAGACCAACAGTTGA
AA sequence Show only first row Show all	>Potri.003G150000.3 pacid=42786380 polypeptide=Potri.003G150000.3.p locus=Potri.003G150000 ID=Potri.003G150000.3.v4.1 annot-version=v4.1 MKGTCFLNFIPTFLFLVSMAYSAMEVTNVTADQTALLALKAHLTDPHNILPNNWSTTASVCSWIGVTCGAQRDRVSGLNLSHMSLSGYIPSEIGNLSFLS FLSIRNNNFQGSLPNELARLLHLEYLDFGFNSFTGDIPPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTINISYNQLHGFMPSSIFSRSSLYTIDL SFNHLSGEIPADIFNHLPELRGIYFSRNRLSGSIPRTIGNCTLIEEINFSENNLTGVLPPELGGLSNLKTLRMDDNALIGNVPSALFNISAIEVIGMYTN LLSGSLPPTMGLFMPNLRELRLGGNELEGTIPSSISNASTLAVVDLSNNSFTGLIPGTIGNLRQLQVLNLANNHLTSESSTPQLSILSALGNCKNLRRIY FSVNPLNTTLPISFGNLSSSLEQFWADDCNLKGNIPNTIGNLSSLIALSLANNELASVVPTTTERLTNLQLLDLQGNQLEGNITDNLCHSDSLFDLSLGG NKLSGSIPECLGNLTTLRHLNLSSNNFTSTIPLSLGNLAGILVLNLSSNFLSGSLPLVFRQLMVAEEIDLSRNQLSGQIPNSTWFHKNLAYLSLATNRLQ GPIPGSLSFAVSLEFLDLSHNSLSGLIPKSLETLLHLKYFNVSFNVLQGEIPSEGPFRNFSAQSYMMNNELCGAPRLKVPPCKTYALRGSTVTLVFLLEL ILPLIAATMAALFIFIWLRCPNKNVRPNLVSTRFTYRDLEQATDGFGEGNLLGRGSFGSVYKGTLSDGKIVAIKVFDAENEVCCRSFEVEREVMCNACHP NIITIFCSSNAVNFKALVIEYMVNGSLDKWLYTHNYSLDILQRLDIMINTASALEYLHSGCSRIIIHGDLKPSNILLDEDMISRLSDFSISQFLKPDGQQ NSSGPSLFLGTIGYVAPEYGIHGIVSKETDVYSFGILLMETFTGKKPTDEMFGGEMSLRSWIIETLPREIERVVDPCLLQNEEEYFHAKTTCLSDIMRLA LMCTSESPVERLNMKVVVDTLDEIKRLFLRNISGDNPGESNLEELDPNRIRNNMKKFVKWRRETLLPNLEWRLPDYQYETNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	0	1
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	1.73	0.9255
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	2.44	0.8983
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	4.47	0.8767
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	4.89	0.8882
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	6.24	0.8438
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	8.24	0.8097
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	12.64	0.8798	Pt-MPK3.2
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	16.49	0.8631
					Potri.003G184501 [exp]	18.52	0.7942
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.002G196200 [exp]	19.44	0.8045

Compare expression of checked genes

Potri.003G150000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.