Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56370 137 / 3e-36 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 131 / 4e-34 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 130 / 8e-34 EFR EF-TU receptor (.1) AT5G01890 129 / 2e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT2G26330 128 / 3e-33 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47110 122 / 6e-31 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 121 / 7e-31 Leucine-rich repeat protein kinase family protein (.1) AT1G75640 117 / 2e-29 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 116 / 3e-29 ERL2 ERECTA-like 2 (.1) AT5G63930 116 / 6e-29 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150000 [exp] 485 / 6e-165 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150100 [exp] 415 / 5e-138 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.011G140901 [exp] 185 / 1e-53 AT4G20140 291 / 3e-84 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G029900 [exp] 164 / 2e-45 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068500 [exp] 158 / 1e-43 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G145200 [exp] 140 / 2e-37 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 140 / 2e-37 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 138 / 9e-37 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 132 / 1e-34 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004827 [exp] 133 / 7e-35 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 133 / 9e-35 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 132 / 1e-34 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 130 / 1e-33 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 129 / 2e-33 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 129 / 2e-33 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 128 / 4e-33 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 127 / 9e-33 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 126 / 2e-32 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 124 / 7e-32 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G150050.1 pacid=42787000 polypeptide=Potri.003G150050.1.p locus=Potri.003G150050 ID=Potri.003G150050.1.v4.1 annot-version=v4.1 ATGAAGGGAACTTGCTTTCTTAATTTCATTCCAACTTTTTTGTTCCTAGTTTCCATGGCTTACAGTGCAATGGAAGTAACTAATGTTACAGCCGATCAAA CTGCTCTTCTAGCTCTTAAAGCCCATCTTACTGACCCTCATAACATCTTGCCAAACAACTGGTCCACCACTGCCTCTGTATGCAGCTGGATTGGTGTCAC TTGTGGTGCTCAGCGCGACCGAGTGAGTGGCTTGAATCTTTCTCACATGAGTCTTTCTGGCTACATCCCTTCAGAGATTGGAAACCTTTCATTCCTCTCT TTCCTATCCATTAGAAACAACAATTTCCAAGGATCCCTGCCTAATGAGTTAGCTCGCTTGCTTCACCTGGAGTATCTTGACTTTGGATTCAACTCATTCA CCGGAGACATTCCTCCAAGCTTAGGTTCCTTGCCTAAACTCAAAAGCTTGCTGCTAGAAGCCAACTTTTTCTTAGGCAATTTACCATTATCATTATGGAA TATATCCTCATTGCAAACAATCAATATCAGTTACAACCAGCTTCATGGTTTCATGCCCTCCAGCATCTTCAGCAGGTCTTCACTGTATACAATTGATCTA AGTTTCAATCACCTATCGGGTGAAATCCCAGCGGATATTTTCAATCATCTCCCCGAATTACGAGGGATCTATTTCTCCAGGAATCGACTCAGTGGAAGCA TTCCAAGAACTATTGGGAACTGTACATTGATTGAGGAGATAAATTTCAGTGAAAACAACTTGACAGGTGAGATCAAGCCAAACTGGCCCTTTCTAACTTA CCTTGTTTTGATTAGTTCTATTGAGTTTCAGTGA
AA sequence Show only first row Show all	>Potri.003G150050.1 pacid=42787000 polypeptide=Potri.003G150050.1.p locus=Potri.003G150050 ID=Potri.003G150050.1.v4.1 annot-version=v4.1 MKGTCFLNFIPTFLFLVSMAYSAMEVTNVTADQTALLALKAHLTDPHNILPNNWSTTASVCSWIGVTCGAQRDRVSGLNLSHMSLSGYIPSEIGNLSFLS FLSIRNNNFQGSLPNELARLLHLEYLDFGFNSFTGDIPPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTINISYNQLHGFMPSSIFSRSSLYTIDL SFNHLSGEIPADIFNHLPELRGIYFSRNRLSGSIPRTIGNCTLIEEINFSENNLTGEIKPNWPFLTYLVLISSIEFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150050 [exp]	0	1
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030519 [exp]	1.41	0.9475
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147000 [exp]	1.41	0.9487
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	4.58	0.9312
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.003G081200 [exp]	5.65	0.9353
AT3G28540			P-loop containing nucleoside t...		Potri.004G091250 [exp]	7.07	0.9106
AT4G21865			unknown protein		Potri.008G172000 [exp]	7.14	0.9396
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147200 [exp]	9.32	0.9069
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247900 [exp]	11.31	0.8314	SGGN1.2
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	11.95	0.9171
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	12.00	0.9336	AOS.7

Compare expression of checked genes

Potri.003G150050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.