Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 503 / 3e-161 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 443 / 2e-138 EFR EF-TU receptor (.1) AT3G47580 437 / 2e-136 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 425 / 9e-132 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 418 / 4e-129 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 401 / 2e-121 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 395 / 7e-119 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 375 / 1e-112 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 377 / 3e-112 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 373 / 9e-112 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150000 [exp] 1561 / 0 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068500 [exp] 765 / 0 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G029900 [exp] 742 / 0 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 511 / 3e-164 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 494 / 2e-157 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 493 / 5e-157 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 481 / 7e-153 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 477 / 3e-151 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G140901 [exp] 465 / 6e-150 AT4G20140 291 / 3e-84 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033384 [exp] 487 / 4e-155 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 478 / 2e-151 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 474 / 3e-150 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 470 / 1e-148 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 467 / 9e-148 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 462 / 4e-144 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 461 / 5e-143 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 456 / 6e-143 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 452 / 2e-141 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 450 / 5e-141 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G150100.4 pacid=42787407 polypeptide=Potri.003G150100.4.p locus=Potri.003G150100 ID=Potri.003G150100.4.v4.1 annot-version=v4.1 ATGAAGGGTACTTGCTTTCTTGAGTTCATCTCAGTCTTTTCGCTGCTGGCTTGCGTAGGAATGGTACTCACCAATAATTCCACCGATCAGACTTCTCTTC TAGCCTTGAAAGATAAAATTGTTAATGATTCTCATAACGTCTTGGCAAACAATTGGTCCACCACTGCCTCAGTATGCAGCTGGATTGGTGTCACTTGTGG TGCTCCGCGCGACCGAGTGAGTGGCTTGAATCTTTCTCACATGAGTCTTTCTGGCTACATCCCCTCAGAGATTGGAAACCTTTCATTCCTTGCTTTCCTA TCCATTAGAAACAACACTTTCCATGGATCCCTGCCTAATGAGTTAGCTCACTTGCTTCACCTGGAGTATCTTGACTTTGGATTCAACTCATTCACCGGAG ACATTCCTCCAAGCTTAGGTTCCTTGCCTAAACTCAAAAGCTTGCTGCTAGAAGCCAACTTTTTCTTAGGCAATTTACCATTATCATTATGGAATATATC CTCATTGCAAACAATCAATATCAGTTACAACCAGCTTCATGGTTTCATGCCCTCCAGCATCTTCAGCAGGTCTTCACTGTATACAATTGATCTAAGTTTC AATCACCTATCGGGTGAAATCCCAGCGGATATTTTCAATCATCTCCCCGAATTACGAGGGATCTATTTCTCCAGGAATCGACTCAGTGGAAGCATTCCAA GAACTATCGGGAACTGTACATTGATTGAGGAGATAAATTTCAGTGAAAACAACTTGACAGGTGTATTACCACCTGAACTGGGTGGCCTTACCAACCTGAA AACATTGAGAATGGACGACAATGCTTTAATTGACAATGTTCCATCCGCGCTCTTCAATATATCGGCAATTGAAGTTATTGGGATGTATGCAAATTTGCTT TCAGGGAGTCTTCCTCCAACCATGGGCCTTTTCATGCCGAACCTAAGGGAGCTTCGTCTAGGGGGAAATGAACTCGAGGGAACAATTCCTAGCTCCATCT CTAATGCATCTACTCTCGCTGTCGTGGACTTATCCAACAATTCATTTACTGGTCTTATTCCTGGGACAATTGGTAACCTGAGACAACTTCAAGTGCTCAA TGTAGCCAACAATCATTTGACGAGCGAGTTTTCTACACCACAGTTAAGTATTCTCTCTGCATTGGAAAATTGCAAGAATCTGAGAAGGATATATTTGTCA GTCAATCCCCTCAATACCACCCTTCCAATTTCCTTTGGAAATCTCTCTTCCTCACTTGAACAGTTTTGGGCAGACGATTGCAACCTTAAGGGCAACATTC CTAATACAATCGGCAATTTAAGCAGCCTGATAGCTTTGAGCTTGGCAAACAACGAACTGGCCAGTGTAGTTCCAACTGCAACTGAAAGATTGACAAATCT CCAACTTTTGGATCTCCAAGGTAATCAACTAGAGGGAAATATCACAGATAACCTTTGCCACTCGGACAGCTTGTTTGACTTATCCTTGGGTGGTAATAAG CTTTCCGGATCTATCCCTGAATGCTTGGGTAATCTGACAACTTTAAGACATCTCAACTTAAGCTCCAATAACTTCACTTCCACAATACCCTTGTCCTTGG GGAACCTTGCAGGTATTTTGGTTCTCAACCTGTCGTCAAACTTTCTCAGCGGGTCTCTCCCGTTAGTATTCAGACAACTGATGGTCGCGGAAGAAATTGA TTTGTCAAGGAATCAGTTATCAGGTCAAATTCCAAACAACACATGGGACCTTAAGAATCTAGCTTATCTCTCCTTGGCTACAAATAGATTGCAAGGTCCT ATTCCTGGGTCACTTAGTTTTGCAGTAAGCTTGGAGTTCTTGGATCTCTCTCATAACAGTCTTTCTGGACTTATTCCCAAGTCCTTAGAGACACTCTTGC ATCTCAAATATTTTAATGTGTCTTTCAATGGACTAGAGGGAGAAATTCCTAGTGAGGGACCTTTCAGAAACTTCTCAGCTCAGTCATACATGATGAACAA TGGACTTTGCGGCGCACCACGCCTACAAGTTGCACCTTGCAAAATTGGTCACAGGGGATCAGCCAAAAACCTTATGTTCTTTATAAAATTGATTTTGTCA ATAACACTAGTTGTGTTGGCATTATACACAATCCTATTCTTAAGATGTCCGAAAAGGAACATGCCCTCAAGCACAAACATAATTACTTATGGAAGATATA CATGCCGAGAACTTCGGCTTGCAACAGATGGGTTTGATGAAGGCAACGTAATTGGCTCTGGGAACTTCGGTACAGTATACAAAGGGACGCTAAGTGATGG AAAGGTAGTTGCCATAAAGGTTTTCGATGTGGAAGATGAAAGAAGTTTGAGTAGTTTCGATGTCGAGTATGAAGTGATGTGTAATGCCAGTCATCCGAAT CTTATCACCATTTTCTGCAGCTTGAATGGTATTAATTTTAAAGCCTTGGTGATGGAGTACATGGTTAATGGCAGCCTTGAAAAGTGGCTTCATACTCACA ATTACCACTTGGATATCCTACAAAGACTAGACGTGATGATCGACACTGCAGCAGCAATCAAACACCTCCATTACGATTGTTTGAGGACTATTATTCACTG TGATTTAAAGCCAAGCAACATCCTACTAGACGAAGACATGATCGCACGCGTTAGTGATTATAGCATTTCCATGATTCTAGATCCAGATGAACAGGGTTCT GCTAAACAAAGCAAGTTTTTGTGCACAATTGGTTATGTGGCACCAGAATGTGGACTGTATGGAACTGTTTCTGAAAAATCTGATGTCTATAGTTTTGGCA TCTTGCTTATGGAAACTTTCACGGGAAAGAAGCCGACGGATGAAATGTTTTATCGAGAAATGAGCTTGAAGAATTGGGTGGAGGAGTCATTGGTACAAAA TCACATAGCCAGAGTAATCGATCCATGTTTGATGGAGAATGAGGAAGAATATTTTGATGCAAAAATTACATGTTTGTCGCTCATTATGAGATTGGCTCAA TTGTGCTGTTCAGAGTCACCTGCTCACAGGTTAAATATGAAACAAGTTGTCGACATGCTCAAAGACATCAAACAATCCTTCGTTGCGAGCATTTCCGGAG ATATTCATGGGAAATTCATCTTGGAGATCCTGAGAACAGATCGCATCAGAAATAACATGGAGAAGTTTGCTAAATGGAGGAGGGAAAGCGTGTTGGACGC GTAA
AA sequence Show only first row Show all	>Potri.003G150100.4 pacid=42787407 polypeptide=Potri.003G150100.4.p locus=Potri.003G150100 ID=Potri.003G150100.4.v4.1 annot-version=v4.1 MKGTCFLEFISVFSLLACVGMVLTNNSTDQTSLLALKDKIVNDSHNVLANNWSTTASVCSWIGVTCGAPRDRVSGLNLSHMSLSGYIPSEIGNLSFLAFL SIRNNTFHGSLPNELAHLLHLEYLDFGFNSFTGDIPPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTINISYNQLHGFMPSSIFSRSSLYTIDLSF NHLSGEIPADIFNHLPELRGIYFSRNRLSGSIPRTIGNCTLIEEINFSENNLTGVLPPELGGLTNLKTLRMDDNALIDNVPSALFNISAIEVIGMYANLL SGSLPPTMGLFMPNLRELRLGGNELEGTIPSSISNASTLAVVDLSNNSFTGLIPGTIGNLRQLQVLNVANNHLTSEFSTPQLSILSALENCKNLRRIYLS VNPLNTTLPISFGNLSSSLEQFWADDCNLKGNIPNTIGNLSSLIALSLANNELASVVPTATERLTNLQLLDLQGNQLEGNITDNLCHSDSLFDLSLGGNK LSGSIPECLGNLTTLRHLNLSSNNFTSTIPLSLGNLAGILVLNLSSNFLSGSLPLVFRQLMVAEEIDLSRNQLSGQIPNNTWDLKNLAYLSLATNRLQGP IPGSLSFAVSLEFLDLSHNSLSGLIPKSLETLLHLKYFNVSFNGLEGEIPSEGPFRNFSAQSYMMNNGLCGAPRLQVAPCKIGHRGSAKNLMFFIKLILS ITLVVLALYTILFLRCPKRNMPSSTNIITYGRYTCRELRLATDGFDEGNVIGSGNFGTVYKGTLSDGKVVAIKVFDVEDERSLSSFDVEYEVMCNASHPN LITIFCSLNGINFKALVMEYMVNGSLEKWLHTHNYHLDILQRLDVMIDTAAAIKHLHYDCLRTIIHCDLKPSNILLDEDMIARVSDYSISMILDPDEQGS AKQSKFLCTIGYVAPECGLYGTVSEKSDVYSFGILLMETFTGKKPTDEMFYREMSLKNWVEESLVQNHIARVIDPCLMENEEEYFDAKITCLSLIMRLAQ LCCSESPAHRLNMKQVVDMLKDIKQSFVASISGDIHGKFILEILRTDRIRNNMEKFAKWRRESVLDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150100 [exp]	0	1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	2.23	0.7761
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.006G209200 [exp]	8.00	0.7576
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	16.97	0.7095
AT5G10695			unknown protein		Potri.010G251000 [exp]	23.30	0.7588
					Potri.017G153100 [exp]	26.98	0.6925
AT3G20600		NDR1	non race-specific disease resi...		Potri.011G133900 [exp]	29.74	0.7442	Pt-NDR1.2
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	30.29	0.6918
AT2G04515			unknown protein		Potri.014G166900 [exp]	36.05	0.6715
AT1G44130			Eukaryotic aspartyl protease f...		Potri.005G179900 [exp]	38.53	0.6748
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	39.69	0.7289

Compare expression of checked genes

Potri.003G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.