Plant FIBer expression Database

Potri.003G150450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51230 707 / 0 C2H2ZnF AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
AT4G16845 259 / 2e-79 VRN2 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
AT2G35670 131 / 1e-31 FIE2, FIS2 FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, VEFS-Box of polycomb protein (.1)
AT4G16810 114 / 9e-28 VEFS-Box of polycomb protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G080200
[exp]
1071 / 0 AT5G51230 703 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Potri.003G081400
[exp]
367 / 4e-121 AT4G16845 390 / 2e-133 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032500
[exp]
781 / 0 AT5G51230 733 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Lus10042997
[exp]
775 / 0 AT5G51230 717 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09733 VEFS-Box VEFS-Box of polycomb protein
Representative CDS sequence
>Potri.003G150450.1 pacid=42785758 polypeptide=Potri.003G150450.1.p locus=Potri.003G150450 ID=Potri.003G150450.1.v4.1 annot-version=v4.1
ATGCCGGGGATTCCTTTAGTCACTCGTGAAACCTCCTCATATAGCAGAAGCACGATAGATCAGATGTGCCGTGAAGATGGACGTGGTGGTGGTGGTGGTT
TGCATTTAACTGAAGAAGAAGAAATTGCTGCTGAAGAAAGTCTTTCGATGTATTGCAAGCCTGTTGAGCTTTATAATATTCTTCAGCGTCGCGCCATTGG
AAATCCGTCGTATTTGCAAAGATGCTTGCGGTATAAAATACAGGTGAAGAATAAAAGAAGAATACAAATGACAATTTCGATGCCTGTTACTCTAAATGGA
GCTGTACAGTCACATAGTCTATTTCCCCTGTACATTTTGTTGGCAAGGCTTGTATCCAAAATTGGGGTTTTAGAGTATTCTGCAGTATATCACTTTAGTC
GACCGTGTGTTTTGACCAACTTTGCTGGAGTCGAGGGCAGTACTCAAGCGCAAACAAATTTCGTTCTCCCTGAGATGAATAAGCTAGCATCAGAGGTCAA
ATCTGGCTCACTGTATGTCTTGCTTGTCAGCTTTGCTGGGGCCCAAAGTTCTATGCGTGGAATTGATTTAACCAACGGTCATTTGGAAAATGTTGGAGGA
TGCTGTCTATTGGGGAAGATACCATTAGACTCGCTGTGTAATTTTTGGGAGAAGTCACCAAATTTGGGTTTGGGACAACGAGTGGAGGTGACATCTCCTG
TTGACATGAATGCTTGCTTCTTGAAGTTGACTTGTTTGACCGAGGACAACTGTGTTTTAATTCAAATTCCATTTAATTCTGAAACTGTGAATACATCACA
GCTGCAAGTCAACGTTTCTGCAGAAGAGGTTGGGGCTAAGGAAAAATCTTCTTATCATTCATACACCTGTGGTGACATTTCTTCTTCGTCGTTGTCTCAT
ATCATTCGGTTGAGGGCAGGAAATGTGATTTTCAACTATAGGTATTACAATAATAAGTTGCAGAAAACTGAAGTAACTGAAGACTTTTCCTGCCCATTCT
GCTTGGTAAAATGTGCAAGCTTCAAGGGTCTGAGATATCACTTGCCCTCATCACATGATCTCTTCAACTTTGAATTTTGGATAACGGAAGAATTTCAAGC
TGTAAATATATTTGTGAAAACTGATATTTGGAGATCTGAGATTGTTGCAGATGGTATTGATCCAAAACAACAAACCTTCTTCTTTTGCTCAAAGAAACCA
AAGCGCAAAAGACCCAAGAAACTTGTTCAAAAGGCAAAGAATGTACTTGACAAGACTCTGAGCAGGCAACAGGGAGCTGGTGAGCTGCTTGACAAGATTG
GCGGTGGGAAGGATTTGCAAACCGCTAGCATGTGCAGCAGAGAGTATGGAGAACACAATCGTTCTGGTGCTGATGTTGTGGGGGTTTCAGGTTCTGCAGC
ACATGCATATCCTGATGCTGAATGTGCTCAATTGGTACCTGGGAATAATCTTGCACCTCCTGCCATGCTACAATTTGCAAAGACAAGAAAATTATCAATT
GAACGGTCTGACATGAGAAACCGTACGCTCCTTCACAAACGACAATTTTTTCACTCACATAGAGCTCAGCCAATGGCAGTTGAGCAAGTTATGTCAGATC
GGGATAGTGAGGATGAAGTTGACGATGATGTTGCAGATTTTGAAGACCGAAGGATGCTTGATGATTTTGTAGACGTGACTAAAGATGAGAAGCAAATGAT
GCACTTGTGGAACTCATTTGTGAGGAAGCAGCGGGTTCTTGCAGATGGACATATCCCGTGGGCATGCGAGGCATTCACGAGATTGCATGGACACAACCTT
GTCCTAGCCCCAGCTCTGATTTGGTGTTGGAGATTATTTATGATCAAACTGTGGAATCACGGACTGCTTGATGCACGGACGATGAACATGTGTAATATGA
TTCTTGAACAATTCCAAAAGCAGGATTTGGATCCTATGAAAAGCTAG
AA sequence
>Potri.003G150450.1 pacid=42785758 polypeptide=Potri.003G150450.1.p locus=Potri.003G150450 ID=Potri.003G150450.1.v4.1 annot-version=v4.1
MPGIPLVTRETSSYSRSTIDQMCREDGRGGGGGLHLTEEEEIAAEESLSMYCKPVELYNILQRRAIGNPSYLQRCLRYKIQVKNKRRIQMTISMPVTLNG
AVQSHSLFPLYILLARLVSKIGVLEYSAVYHFSRPCVLTNFAGVEGSTQAQTNFVLPEMNKLASEVKSGSLYVLLVSFAGAQSSMRGIDLTNGHLENVGG
CCLLGKIPLDSLCNFWEKSPNLGLGQRVEVTSPVDMNACFLKLTCLTEDNCVLIQIPFNSETVNTSQLQVNVSAEEVGAKEKSSYHSYTCGDISSSSLSH
IIRLRAGNVIFNYRYYNNKLQKTEVTEDFSCPFCLVKCASFKGLRYHLPSSHDLFNFEFWITEEFQAVNIFVKTDIWRSEIVADGIDPKQQTFFFCSKKP
KRKRPKKLVQKAKNVLDKTLSRQQGAGELLDKIGGGKDLQTASMCSREYGEHNRSGADVVGVSGSAAHAYPDAECAQLVPGNNLAPPAMLQFAKTRKLSI
ERSDMRNRTLLHKRQFFHSHRAQPMAVEQVMSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMMHLWNSFVRKQRVLADGHIPWACEAFTRLHGHNL
VLAPALIWCWRLFMIKLWNHGLLDARTMNMCNMILEQFQKQDLDPMKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.003G150450
[exp]
0 1
AT4G00500 alpha/beta-Hydrolases superfam... Potri.014G083600
[exp]
5.91 0.7824
AT1G43620 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glyc... Potri.005G193100
[exp]
6.00 0.8017
AT1G73970 unknown protein Potri.008G016000
[exp]
7.61 0.8100
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Potri.017G092600
[exp]
7.81 0.8202
AT1G77620 P-loop containing nucleoside t... Potri.002G084700
[exp]
9.94 0.7693
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.013G150100
[exp]
13.85 0.7543
AT2G17975 zinc finger (Ran-binding) fami... Potri.005G115100
[exp]
14.69 0.7360
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.010G213700
[exp]
15.09 0.7942
AT5G46050 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE T... Potri.002G258832
[exp]
15.65 0.7189
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.008G064800
[exp]
15.71 0.7531

Potri.003G150450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.