Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61580 795 / 0 PFK4 phosphofructokinase 4 (.1.2) AT4G26270 715 / 0 PFK3 phosphofructokinase 3 (.1) AT4G32840 707 / 0 PFK6 phosphofructokinase 6 (.1) AT5G56630 698 / 0 PFK7 phosphofructokinase 7 (.1) AT4G29220 683 / 0 PFK1 phosphofructokinase 1 (.1) AT5G47810 473 / 2e-164 PFK2 phosphofructokinase 2 (.1) AT2G22480 410 / 2e-138 PFK5 phosphofructokinase 5 (.1) AT1G76550 71 / 6e-13 Phosphofructokinase family protein (.1) AT1G20950 69 / 5e-12 Phosphofructokinase family protein (.1) AT4G04040 67 / 1e-11 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 713 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 712 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.016G002700 [exp] 511 / 3e-179 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 370 / 4e-127 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 377 / 9e-126 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 323 / 5e-109 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 250 / 4e-81 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 101 / 4e-26 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 76 / 3e-14 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005488 [exp] 723 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10043044 [exp] 718 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 716 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 701 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 699 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 500 / 7e-175 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 400 / 2e-134 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 397 / 3e-133 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 193 / 2e-59 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10025167 [exp] 73 / 2e-13 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.003G151100.1 pacid=42784947 polypeptide=Potri.003G151100.1.p locus=Potri.003G151100 ID=Potri.003G151100.1.v4.1 annot-version=v4.1 ATGGATCTCTCACTTGCTGCTTCTCCCTCTTCGTTTGACTTACTATTATTGAACTCCCACAAATTCTCATTATTTCAATTTAAGCCCCACTTCTCTCTCA AATCCAAAAACCCCCCTACAAAATCATTATTTTGGCGCCAAAATCGCCCATTCAGAGTCAGAGCTCTTAACGATGATGGTTTCGTCCTCGAAGATGTGCC TCACTTGACTGATTTCCTCCCTCATCTACCATCGTATCCAAATCCTTTACATCACAGCCATGCCTACGCGATTGTCAAGCAGACTTTTGTTGGACCAGAC GATGCAGTCGCACAAAATATTGTTGTTCATAAAGATAGTCCTAGAGGTGTCCATTTCCGGCGAGCCGGCCCCAGAGAGAAGGTGTATTTTATGCCTGATG AAGTGCGTGCTTGCATAGTGACATGTGGGGGTTTATGTCCCGGGATCAATACAGTGATTCGCGAGATTGTATGCGGATTGAATTATATGTATGGAGTTGA TGATGTACTTGGCATTATGGGAGGTTATAGGGGTTTTTATTCAAAAAACACCATAAATTTGACGCCCAAAGTTGTGAATGATATACATAAGCGTGGTGGC ACATTTCTTTGCACTTCACGAGGAGGTCATGACGCAAACAAGATAGTTGATAATATTCAGGACAGGAGAATAAATCAGGTATATATTATTGGAGGTGATG GCACTCAGAGAGGAGCAGCTTTAATTTACAAGGAAGTTGAGAAACGTGGTCTTCAAGTGGCTGTTGCTGGGATCCCCAAGACGATTGATAATGATATAGC GGTGATAGACAAATCTTTTGGATTTGATACCGCTGTTGAAGAAGCTCAGAGAGCAATTAATGCTGCACATGTGGAGGTTGAAAGTGTGGAAAATGGAGTT GGGATTGTTAAACTGATGGGCAGATACAGTGGTTTCATTGCAATGTTTGCAACTTTGGCAAGTCGAGATGTGGATTGTTGCTTGATTCCAGAATCGCCAT TCTATCTAGAAGGTCCTGGTGGTCTTTTTGAATTTATTGAACAGAGGATCAAAGAAAATGGGCATATGGTTATTGTGATAGCAGAAGGAGCCGGGCAGGA ATACGTAGCTCAGGCCATGCAGGCAGCTGATGAGAGAGATGCATCAGGGAACAGACTACTTCTTGATGTTGGTCTGTGGTTAACTCAAAAGGTTAAGGAT CATTTTACAAAGGTGAAGAAGATGGAGATAAATATGAAATATATAGATCCTACATACATGATTAGAGCTATCCCAAGTAATGCATCAGACAACATTTATT GCAGTCTTCTAGCACAAAGTGCTGTTCATGGGGCCATGGCTGGGTACACAGGATTCACAGTTGGTCCAGTAAACAGCAGACATGCTTATATTCCCATTGC TCGTGTGACAGAGGCACAAAATACAGTGAAGGTAACAGGTAGGATGTGGGCCAGACTTCTTGCTTCAACAAATCAGCCTAGTTTCTTGAATTCCAACGAG ATGCTGCCAATTTAA
AA sequence Show only first row Show all	>Potri.003G151100.1 pacid=42784947 polypeptide=Potri.003G151100.1.p locus=Potri.003G151100 ID=Potri.003G151100.1.v4.1 annot-version=v4.1 MDLSLAASPSSFDLLLLNSHKFSLFQFKPHFSLKSKNPPTKSLFWRQNRPFRVRALNDDGFVLEDVPHLTDFLPHLPSYPNPLHHSHAYAIVKQTFVGPD DAVAQNIVVHKDSPRGVHFRRAGPREKVYFMPDEVRACIVTCGGLCPGINTVIREIVCGLNYMYGVDDVLGIMGGYRGFYSKNTINLTPKVVNDIHKRGG TFLCTSRGGHDANKIVDNIQDRRINQVYIIGGDGTQRGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV GIVKLMGRYSGFIAMFATLASRDVDCCLIPESPFYLEGPGGLFEFIEQRIKENGHMVIVIAEGAGQEYVAQAMQAADERDASGNRLLLDVGLWLTQKVKD HFTKVKKMEINMKYIDPTYMIRAIPSNASDNIYCSLLAQSAVHGAMAGYTGFTVGPVNSRHAYIPIARVTEAQNTVKVTGRMWARLLASTNQPSFLNSNE MLPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.003G151100 [exp]	0	1
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.015G110600 [exp]	2.23	0.8538
AT5G11680			unknown protein		Potri.001G072600 [exp]	3.46	0.7841
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.010G195000 [exp]	4.89	0.7549
AT5G39010			unknown protein		Potri.018G102900 [exp]	17.74	0.7465
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	49.29	0.6907
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	56.57	0.7209
AT3G12410			Polynucleotidyl transferase, r...		Potri.011G116000 [exp]	56.85	0.6647
AT3G51940			unknown protein		Potri.001G021100 [exp]	58.56	0.6284
					Potri.008G026250 [exp]	61.79	0.6429
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	63.87	0.6099

Compare expression of checked genes

Potri.003G151100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.