Plant FIBer expression Database

Potri.003G151300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51180 542 / 0 alpha/beta-Hydrolases superfamily protein (.1.2)
AT4G25770 348 / 3e-118 alpha/beta-Hydrolases superfamily protein (.1.2)
AT1G10040 346 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1.2)
AT1G29120 271 / 1e-87 Hydrolase-like protein family (.1.2.3.4.5)
AT1G09980 47 / 1e-05 Putative serine esterase family protein (.1.2)
AT1G58350 47 / 2e-05 ZW18 Putative serine esterase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G079400
[exp]
650 / 0 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.018G096035
[exp]
350 / 5e-119 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.002G113000
[exp]
325 / 5e-109 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.011G065700
[exp]
260 / 3e-83 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Potri.019G077700
[exp]
45 / 7e-05 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3)
Potri.013G104400
[exp]
42 / 0.0004 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032496
[exp]
589 / 0 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10042993
[exp]
563 / 0 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10006982
[exp]
317 / 1e-105 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10001320
[exp]
302 / 8e-101 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10001893
[exp]
253 / 3e-80 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Lus10013909
[exp]
249 / 1e-78 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Lus10038351
[exp]
42 / 0.001 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF05057 DUF676 Putative serine esterase (DUF676)
Representative CDS sequence
>Potri.003G151300.2 pacid=42785724 polypeptide=Potri.003G151300.2.p locus=Potri.003G151300 ID=Potri.003G151300.2.v4.1 annot-version=v4.1
ATGGAGAACAGAGCTGTAGAGAACGGAGTTTGTTCAACAGAATCAGTGAATGTTAGCTCTGATGTTTGGAGTTGTAAAAATTCTGATTCTTCTTCTGCTG
ATCATCTTGTCATTATGGTCCACGGTATCCTTGGAAGTAACACTGATTGGAAGTTTGGAGCAGAGCAGTTTGTTAGAACTTTACCTGATAAAGTATTTGT
TCATTGTAGTGAAAAAAATATGTTTAGGCTGACACTTGATGGTGTTGATGTGATGGGTGACCGTTTGGCCGAGGAGGTACTTGAAGTGATTCAAAGAAAG
CCAAATTTGCAGAAGATTTCATTTGTTGCACATTCTGTGGGAGGATTAGTGGCGAGATATGCAATTGGGAGATTGTATAGACCACCCAAGAAAGAAAACG
TAGAAGATTCAACTGATGGTACAAGCATAGATGACTTAAAGGCTACAATTGGTGGCTTGGAGCCTATGAACTTTATCACTGTTGCTACACCACACCTTGG
TTCCAGGGGAAATAAGCAGGTTCCATTTCTTTTTGGTGTAACTGCCTTTGAGCAAGCAGCCAACCTCTTGATTCATTGGATATTTAAGAGAACAGGCCGG
CACCTTTTTTTGAATGATGATGATGAGGGCAAACCTCCATTGCTTAAACGCATGATAGAAGATTATGGTGATTGTTTTTTCATGTCAGCATTGCGTATAT
TCAAACGTCGGGTAGCATATTCAAATGTTTGCTATGATCATATTGTGGGCTGGAGAACATCGTCCATTAGACGTAATATTGAATTGCCGAAGTGGGAGGA
TTATATTAACAAGGAATATCCACATATTGTATACGAAGAATGCTGCAAGGCCTGCGACACTGAGCAGTCTGAGCTTGTTTCAACAGATGATGATAGTTTC
GACAAGTTAGAAGAGGAACTAGTGACAGGTCTATCCCGTGTGTCATGGGAAAAAGTAGACGCTAGCTTCCACACCTGCAGACAGAGGTTTGCTGCTCATA
GTGTCATTCAGGTTAAAGATCAGAGCATGCATATAGAAGGCGCGGATGTCGTACAACATATGATCGATCATTTTCTTCTGTGA
AA sequence
>Potri.003G151300.2 pacid=42785724 polypeptide=Potri.003G151300.2.p locus=Potri.003G151300 ID=Potri.003G151300.2.v4.1 annot-version=v4.1
MENRAVENGVCSTESVNVSSDVWSCKNSDSSSADHLVIMVHGILGSNTDWKFGAEQFVRTLPDKVFVHCSEKNMFRLTLDGVDVMGDRLAEEVLEVIQRK
PNLQKISFVAHSVGGLVARYAIGRLYRPPKKENVEDSTDGTSIDDLKATIGGLEPMNFITVATPHLGSRGNKQVPFLFGVTAFEQAANLLIHWIFKRTGR
HLFLNDDDEGKPPLLKRMIEDYGDCFFMSALRIFKRRVAYSNVCYDHIVGWRTSSIRRNIELPKWEDYINKEYPHIVYEECCKACDTEQSELVSTDDDSF
DKLEEELVTGLSRVSWEKVDASFHTCRQRFAAHSVIQVKDQSMHIEGADVVQHMIDHFLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51180 alpha/beta-Hydrolases superfam... Potri.003G151300
[exp]
0 1
AT3G14470 NB-ARC domain-containing disea... Potri.006G273900
[exp]
7.07 0.7414
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.008G064800
[exp]
10.77 0.7377
AT5G51180 alpha/beta-Hydrolases superfam... Potri.001G079400
[exp]
13.41 0.7408
AT3G10540 3-phosphoinositide-dependent p... Potri.010G232800
[exp]
14.14 0.7087
AT1G19250 FMO1 flavin-dependent monooxygenase... Potri.006G060200
[exp]
21.21 0.6921
AT2G31955 CNX2 cofactor of nitrate reductase ... Potri.001G230604
[exp]
27.16 0.6837
AT1G57600 MBOAT (membrane bound O-acyl t... Potri.013G000600
[exp]
43.81 0.6279
AT5G45030 Trypsin family protein (.1.2) Potri.015G121400
[exp]
47.54 0.6779
Potri.015G116300
[exp]
48.74 0.6613
AT2G02400 NAD(P)-binding Rossmann-fold s... Potri.004G230900
[exp]
49.49 0.6515

Potri.003G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.