Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07590 805 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G079100 [exp] 917 / 0 AT5G07590 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 44 / 0.0002 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G144800 [exp] 42 / 0.0009 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042992 [exp] 850 / 0 AT5G07590 824 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032495 [exp] 838 / 0 AT5G07590 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 46 / 3e-05 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 46 / 4e-05 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017159 [exp] 44 / 0.0002 AT4G29830 545 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G151400.1 pacid=42786082 polypeptide=Potri.003G151400.1.p locus=Potri.003G151400 ID=Potri.003G151400.1.v4.1 annot-version=v4.1 ATGGAGTTTACTGAAGCTTATAAGCAGACGGGTCCTTGTTGTTTCTCTCCTAATTCCCGTTACATCGCTGTAGCTGTTGATTACCGTCTCGTGATTCGCG ACACACTTTCTTTTAAGGTTGTGCAGTTGTTTTCATGCTTGGATAAAATAAGCCATGTAGAATGGGCAAATGATTCTGAGTACATCCTTTGTGGTCTGTA TAAAAGACCGATGATACAAGCATGGTCATTGACTCAACCTGAATGGACATGCAAAATAGATGAAGGTCCTGCTGGTATTGCTTATGCTAGATGGAGTCCC GACAGCCGTCACATACTTACCACTTCAGATTTTCAGTTGAGGCTAACAGTTTGGTCGCTTTTGAACACAGCATGTGTTCATGTCCAGGGACCAAAGCATG TCTCTAAAGGGGTTTCTTTTACTAAAGATGGGAAATTTGCTGCGATTTGTACGAGGCGTGATTGCAAGGATTATGTAAATCTACTGTCGTGTCATACATG GGAGATAATGGGTGCATTTGCTGTTGATACGTTGGACTTAGCTGATATAGAGTGGTCACCGGATGATAGTGCTATTGTAATATGGGATTCACCACTTGAA TACAAGGTTCTAATTTATTCCCCAGATGGGAGGTGCCTATCCAAGTACCAAGCATATGAAAGTGGGCTAGGTGTAAAAAGTGTTTCGTGGTCTCCTTGTG GCCAATATCTAGCCGTGGGTAGTTATGATCAGATGTTGCGGGTTCTGAATCACCTAACTTGGAAAACATTTGCTGAATTCATGCATCTATCAACCGTTCG TGGTCCTTGTTGTGCTGCTGTTTTCAAGGAGGTGGATGAGCCATTGCACCTCAATATGTCTGAGTTATGTTTGAGCGATGAATTTCTCCAAGGAAATTCT GATGTTTCAGAAGGACACTTCAGAGTCATGTACGAGGTTACTGAAGTACCTATTAGTTTGCCTTTCCAGAAGCCTCCTGCAGACAAACCGAATCCTAAAC AAGGCATTGGTCTTATGTCATGGAGTAAAGACAGCCGATATATTTATACACGTAATGATAGCATGCCCACTGCTCTGTGGATATGGGATATACACCATCT AGAGCTTGCTGCCATCTTGGTGCAGAAGGATCCCATACGTGCAGCAGCATGGGACCCAACATGCCCACGTCTTGTTCTCTGCACTGGTAGCTCTCACTTG TATATGTGGACCCCTTCAGGTGCTTACTGCGTGAGCAATCCACTACCACAGTTTAACATAAATGATTTGAAATGGAATTCAGATGGAAGCTGTCTTCTCC TCAAAGACAAGGACTCGTTCTGCTGTGCGGCTGTGTCCTTAATGCCAGAATCTAGTGAATATAGTTCAGATGATTGA
AA sequence Show only first row Show all	>Potri.003G151400.1 pacid=42786082 polypeptide=Potri.003G151400.1.p locus=Potri.003G151400 ID=Potri.003G151400.1.v4.1 annot-version=v4.1 MEFTEAYKQTGPCCFSPNSRYIAVAVDYRLVIRDTLSFKVVQLFSCLDKISHVEWANDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSP DSRHILTTSDFQLRLTVWSLLNTACVHVQGPKHVSKGVSFTKDGKFAAICTRRDCKDYVNLLSCHTWEIMGAFAVDTLDLADIEWSPDDSAIVIWDSPLE YKVLIYSPDGRCLSKYQAYESGLGVKSVSWSPCGQYLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRGPCCAAVFKEVDEPLHLNMSELCLSDEFLQGNS DVSEGHFRVMYEVTEVPISLPFQKPPADKPNPKQGIGLMSWSKDSRYIYTRNDSMPTALWIWDIHHLELAAILVQKDPIRAAAWDPTCPRLVLCTGSSHL YMWTPSGAYCVSNPLPQFNINDLKWNSDGSCLLLKDKDSFCCAAVSLMPESSEYSSDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	0	1
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	1.41	0.9081	XYL1.1
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	2.00	0.8944
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	2.00	0.9157
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	2.23	0.8890
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	3.87	0.8986
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	5.29	0.8837
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	5.74	0.8764
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	7.07	0.8573
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	8.24	0.8649
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	8.83	0.8438

Compare expression of checked genes

Potri.003G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.