Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06530 1243 / 0 ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008676 [exp] 2209 / 0 AT3G06530 1137 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10039121 [exp] 2184 / 0 AT3G06530 1694 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10026144 [exp] 169 / 4e-48 AT3G06530 165 / 8e-48 ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08146 [poplar] [flax] BP28CT BP28CT (NUC211) domain
Representative CDS sequence Show only first row Show all	>Potri.003G151500.3 pacid=42786317 polypeptide=Potri.003G151500.3.p locus=Potri.003G151500 ID=Potri.003G151500.3.v4.1 annot-version=v4.1 ATGACGACAAGTGTAGCTTCTCAATTACAAGCAATCCGGTCAGTGATTCAAACTGGTTTGGAGTCCAAAAAACGTCCCATCACCCGACCCTCCATTTTAT TCGATCCTAAAGAAGCTGCTGATCTTGATATCGATACTATACTTGACATTGCACTTTCAGGTTTGGAAGTTCTTGTAAGCGCGGATGAAAGGTTTAAGAA CTATAAAAATGATCTGTTTAGTCATAAAAGTAAAGAGTTGGATAGAGAATTGATGACTGGCGAGGAAAATAAGCATATTAACTCGACCATCAGTTCATAT TTGAGGTTACTATCTGGACATCTTCAATTGGCTGCATCACTTAGGACACTTGAGTACTTGATACGAAGATACAAGATACATGTATACAATTTCGAGGATT TGATTTTATGCTCATTGCCTTACCATGATACTCATGCATTTGTTCGAATAGTTCAGTTGATTGATACAAGGAATGGTAAATGGAAGTTTCTAGATGGTGT AAAAGCATCAGGTGCACCGCCACCTAGAAATGTCATGGTGCAGCAGTGTGTTCGAGATATGGGAGTTTTGGAGGCGTTGTGCAACTATGCATCTCCTGCA AAGAAGTTCCAGCCATCAAGGTCTGTTGTCAGCTTTTGCACAGCAGTGGTCATAGAGGTATTGGGTTCTATAACTACAGTCAATACAGATGTTGTGCAGA GAATCCTTCCATTTGTTATTTCTGGACTTCAGCCTGGCAGCAAAGGAGGTTCAGATCATAAGGCTGCTGCTTTGATGATTGTTTGTCTATTAGCAAATAA GGTTTCCTTGTCTCCAAAACTTGTCAAAAGTTTGATGCGATCAATTGCTGAGATAGCTCAGAAAGATGCAAGCAAGTCAACTGATCTGCAATGGTTTCGT TTGTCAATTATGGCTCTAATAAATCTCGTTCAGTTGCAATCAATCGATGTGTTCCCAAAGAAGGTACTGGAGATTTTGAAGGAAACCAGGGAAATAGCTG GGGTTCTTATGGGACTTTCTAAGGAGTTCAATATCGATAGATTTCTTGCTGTGCTTTTGGAAGCTCTGGTTGACAACAGTTCTTCTGATGATACATATCA TCATGTTTTGGTATCCATATTGGAGACAGTTCCCATAAAGAATTTTGTTGATCGTGTTGTTTCAAAGGTCCTCTTGTCTTGCATGAAAATGTCTCAGAAA AATAGCAACCCATCATCTCAATCTGGAAGCTGGGCAAAGGACATTCTGATGGTTATTAATAAAATTTATCCATTTGAACTTCATCAAGCTGTTCAGAAGT TTTTGGAGGACACCAAAGTGCAATCCAAAAATGATGATGCAGTTTTTGAGATTTGCAAAATGTTGGATGGGAACTTGGATATGTCAGCTTCCATCTCTGA TTCTAAAATTTGGCTTGCTTTGCACCATCCAAAGGCTGAGGTCCGGCGTGCTACATTGTCTGGTTTAAACAGACATGTTGATCTGAAAAACATGGCTGTT GATTCAAAGAGGCTTGTAACCATTCAAGATGCTGTATTGTGCCAACTTCGTGATGATGACCTAACAGTTGTTCAAGCAGCTTTATCTCTTAAAGGATTGT CTGAAATCATCAGTCCTTCTGATCTTCTCAAAGCATTAGATGGCGTGCTTAAAAAATGTGTTAGCACCCTAAGGTCAGGTGCATCAGATAAAGCTGCTTT AGCTAATGACGTTGCAATTGCATTTTTGAAGACTGCTGTCTCAACATTTCATGATCAGATTGATTATTCAAAGAAACTTGCTGCCATGATGTTTCCTCTT CTCCTAATTTTTCAAAAGACACAGAGCCTAAATTTGGAGGTCTTGGAATTAGTGAAAGAAGTGAAGTGGCCATTTTATAATGATCTCACCGCTGTTTCCT CTGAAGTGGTGAAATTACAACAGGAAGTTATATCTTCGATCAACATGAAGATTGTTAATGGCTTGGCAGAAACATTTTCAATGCACCCAGGTAAGTATAT GACCTGGCTTGTCGACAGCTCCAGTGACTGTACTGTCTCGAAGACGCTTCTGCTCTTGGTTCTGATGCAATCATTTATTAGGCCAAAGAATAAAAGTGAG CAATTCTCAGCACTTTTTGAAGCTTTCTTTTCTTTTCTGAAGACCGAGTGGGAGCTGCAGTCTGCAGTTGTTTCTGGGAATGAGTTCAATAATGAAATGC TTCAATGGGATTGTGGAAGGTTCCTAGATCAGCTGTTTGACACCGATCTTAAGGCATTAAATATTAATATCCTAATCTGCACCTTTTGGAGGTTACTGGA GGCTTTTACTTCAATGGAGGACAATCAGCAGTTGATTAGCAGCAGACATACAGATTTATTTGTCTTTTTCTCGAACTCTCAGTCCAAGCATTTTTTCAAG GAGCATCTTCATTACCTTGTTACAAAATGCAAGATCTCTCCTATTGATTTTCTGTCTGGTTTTTACACTAATGAAGACATTTCCATTACTGTCCAAGTTG AGAGCCTTCATTGTCTTGCATTCCTTTGCTCAGAACCCGACGATAGATTGCTGCTTCAGCTTCTATTCAGTTTCCCCTCACTTCTTGTTCCTCTTGCCTC TGATAGCCAGGATCTCAGGATTGCTTCCATGGGCTGCATTGAAGGGTTATCTGCTCTGTCACATCGCGCTGACTATTTAAGCAAGAAAAATGGTATTTCT GGGAACAATGCAAATTGGAGTCATTTTCTTGATGAGTTATTGGGCCTGATTGTGCAACAAAAAAGGCTTATATTATCAGACAGTAATTTTCTACCCTCGT TTTTGTGCTGTTTGCTTGGCTCATCCAGGAATAGCCTTCTGGTACCACAAAATGTTGAACAAAGATTTGATCAATCTACAAAAGAAAAGATTCTTGCCTT TGTCTTGGGGTCTGGACTTCAACTTTCCTCGTTTGCAAAGATGATGATTATATCTTTGCTTAAAGGAATGGGCAGTGCGTTACTGCATGTTAAAGAAGCT GAGTCATTGCTGTCTCAACTTCTGAAAAGACGCCGTCAATATTATTTCGAGGTGGACCGGTCATCCCAGAAATTGTCCAAAACCGAAGTCAAGATCTTGT GCCTTCTACTGGAGGTTTGTGCCATGCCTCCATCACTGGAGGGGCATGCTTGTGAAGATTATCTATTAAAGGCCCTGCAACTGGATGGGCTCTCTTCTGA AGAATTTGCCATTATAGAACCTTGCATTACTGTTTTGCAGAAGCTAAGTGCCCCATTATACAGTGGATTGACAACTGAAAAACAGGAGCTTCTATTTCGT GAGCTTGTGATTTTGTTTCGCAATGCTAATGGTGATATACAAAATGCAACAAGAGAGGCCTTGATGCGCTTAAATATTACCTGCTCTACGGTAGTCCATA CAATCAAATTCATATTCGAACAAGAAAGTCGTATAGGTGGTTCTGCATCCGGGAAGAAGAAAAGGAAATCTATAGTACATCAAACATCCACCTTAGATGG TGATGTGGTTTGTAAAGTAGAAACTGCATTATGCTTGCTAAGCTCCCTCCTTGACATATTGATTCTCAAGAAAGATATTGCTAGCAGGGAGCATCTGATA GGGCCCTTATTCAAACTTCTTGAGAAAATCTTTTCGGATGATTGGATGCCTGCCCGAGATGAAAACTGGATCAAAGCTTCATATGGAGTTTCCCAGACTG GGTCTAGCACAATTTGTTACACTCAGCAAACACTTCTACTTGTTCTTGAAGATATTATCGGTTCACTTAAAAATGTAATCCCATTAAAGGATGACATAAC AAATAAAATCAATATCAAATTGTTGATCATGTGTGCCCGGTCTGCTAAGCATGGAGTCGTCCGCAACCATGTATTTTCACTGTTATCATCCATTGTAAAG GTTGTTCCAGAGAATATAATGGGGTATATATTGGATATATTTACCGTTGCTGGAGAATCAACTGTTTCACAGATTGACAGCCATTCACAACATGTGTTTG AGGATCTTATATCTGCAGTTGTCCCCTGCTGGCTGGCTGAGACACGCAACACAGACAAATTGCTCCAGGTTTTTGTGAATGTATTGCCCAAAATTGCTGA GCATAGGAGGCTGTCAATCGTCGTGTACTTGTTGAGGACTTTGGGTGAACATAATAGCTTGGCTTCGTTGCTTGCCCTTCTTTTCCGGTCCTTAGTTTCT AGGAAAGGACTCTCCCTCCTTGATGAAACAAATGATCTTACATCTTCTGCAGAGAGAGAGTGGGAGTATGCATTTGCAATTCGGATATGTGAGCAATATT CATGCAGGATTTGGCTTCCCTCCCTTGTTCCTCTGCTTCAACTAATAGGAGCTGGCAATTCATGCCAAGAAATTTTTATGGAATTGCTATTTGCAACAGA ATTTATTTTACACAAGTTAGAAGATCCAGAATTCTCTTTCAAACTTGATTCAAGCGAGGATTCAGATAAAATTCAGGAAACCCTTCAAGAACTTTTGGAG CACGTTGTTTGCCTTTCACAACTAAGCGATTTGAGAAGAAAACAAATAAATGTGCCTGTTAGAGTCAGAAAGGAAATGAAAGAGTGTATGCATGGTGTTT TGAGGTCTACTACAGCTGTTATGATCCCCTCCGCATACTTCAGAGGCATCATTAGTTTGCTTTGCAATTCAGATGGAAATGTGAAAAAGAAGGCTCTTGG GCTTCTTTCTGAGACGTTGAAGAAGCGTGAGTCAATTAAAACGAAACACAAGGGAAGAAGAGATTCCATTGCAAGTTCAATTACTGATTGGTTCCATGTG GATGGGAGTACCCTCGACTCTTTTCAGCAGATGTGTTTGGAAATTGCTCGGCTAATTGATGATACAATGGATGACTCAGATACCTCCTTGAAACTGTCAG CAGTTTCTACACTGGAAGTTTTGGCCCATAGATTTTCTTCTAATTATTCTGTCTTCAGCATGTGCCTTCCATCTATCACAAAAGGCATTTGTTCGAACAA CTTGGCTATTTCTTCTAGCTGCCTTCGAACAACTGGTGCTCTAGTCGATGCTCTTGGGCCAAGAGCATTTGTTCAGCTTCCTCAAATAATGGAGAATGTG ATAAAAACTTCTAGCAAATTCTCTGCTGCACTGTCTCTTCCTGAAGAATCTCTCATGCTCTCTATTCTTCTTGCTTTAGAAGCTGTTGTAGACAAGCTGG GTGGTTTCCTCAATCCATATCTTGAAGATATTATACGACTCGTGGTGCATGGTCCTGAGTACACATCAGGATCAAAAATGAAACTGAGACAGAAAGCTGA TGCAGTACGGAAGCTGCTTACTGAGAAGATCCCTGTTCGACTAGCTCTTCCACCGTTGTTGAAGATGTATCCTGATACTGTGGAGGCTGGGGATTCAAGT TTGGCAGTTTTCTTTGAAATGCTTGGAAGCTTAGTCGGTACAATGGACAGATCATCTGTTGGTGGTTATAATGAAACCATTTTTGACCTCTGCTTGCGTG CTCTTGATCTTCGTCGTCAACATCCTGTTTCAATTCAAAATATTGATCTAGTTGAGAAAAGCATTATCAATGCAATGATTGCTCTGACAATGAAACTTAC GGAGACCATGTTTAAGCCGCTCTTTATTAGAAGTATTGAATGGGCTGAGTCATATGTAGAAGAAAATGACAGTAAGGACAATGTTATAGATAGGGCCATA TCTTTCTATGGTCTGGTAAACAAACTTGCTGAGAATCATCGGTCTCTGTTCGTCAGTTACTTTGAGTACTTGCTAGAGGGTTGTGTTCGGCATCTTACCA ATATTGTAAAGCCTAAAGGTGCTGGTTTGATTCAAAAGAAAAAGAAAGCTAAGATTCAGGAAGCTGGAAGTGATATAAAAGAGAACAGTGTCCTAACACT TAAAAGCTGGCATCTCAGGGCTTTGGTCATTTCAGCTTTACATAAATGCTTTTTGTACGACACTGGGAGCCGGAAGTTTCTTGATTCGTCAAAATTTCAG GTTCTGTTGAAGCCCATTGTATCACAGCTTATAGCCGAACCACCAGCATTACTGGAAGAGCATCCAAGTATCCCATCAGTTAACGAAGTTGATGAATTGT TGGTAGTTTGTATAGGTCAAATGGCAGTTACTGCAGGAACTGATCTTCTTTGGAAGCCCCTGAACCATGAGGTATTGTTGCAAACTCGGAGTGACAAGAT ACGATCTCGAATTCTAGGACTGAGAATTGTTAAATATCTTATGGATAACCTGAAAGATGAATATTTGGTCTTCCTGCCTGAAACCATCCCATTCCTTGGT GAATTGCTCGAGGACTTGGAGTTACCTGTTAAATCTCTGGCCCAGGATGTTCTAAAGGAAATGGAGTCCATGAGTGGTGAAAGCCTTCAGCAATATCTCT GA
AA sequence Show only first row Show all	>Potri.003G151500.3 pacid=42786317 polypeptide=Potri.003G151500.3.p locus=Potri.003G151500 ID=Potri.003G151500.3.v4.1 annot-version=v4.1 MTTSVASQLQAIRSVIQTGLESKKRPITRPSILFDPKEAADLDIDTILDIALSGLEVLVSADERFKNYKNDLFSHKSKELDRELMTGEENKHINSTISSY LRLLSGHLQLAASLRTLEYLIRRYKIHVYNFEDLILCSLPYHDTHAFVRIVQLIDTRNGKWKFLDGVKASGAPPPRNVMVQQCVRDMGVLEALCNYASPA KKFQPSRSVVSFCTAVVIEVLGSITTVNTDVVQRILPFVISGLQPGSKGGSDHKAAALMIVCLLANKVSLSPKLVKSLMRSIAEIAQKDASKSTDLQWFR LSIMALINLVQLQSIDVFPKKVLEILKETREIAGVLMGLSKEFNIDRFLAVLLEALVDNSSSDDTYHHVLVSILETVPIKNFVDRVVSKVLLSCMKMSQK NSNPSSQSGSWAKDILMVINKIYPFELHQAVQKFLEDTKVQSKNDDAVFEICKMLDGNLDMSASISDSKIWLALHHPKAEVRRATLSGLNRHVDLKNMAV DSKRLVTIQDAVLCQLRDDDLTVVQAALSLKGLSEIISPSDLLKALDGVLKKCVSTLRSGASDKAALANDVAIAFLKTAVSTFHDQIDYSKKLAAMMFPL LLIFQKTQSLNLEVLELVKEVKWPFYNDLTAVSSEVVKLQQEVISSINMKIVNGLAETFSMHPGKYMTWLVDSSSDCTVSKTLLLLVLMQSFIRPKNKSE QFSALFEAFFSFLKTEWELQSAVVSGNEFNNEMLQWDCGRFLDQLFDTDLKALNINILICTFWRLLEAFTSMEDNQQLISSRHTDLFVFFSNSQSKHFFK EHLHYLVTKCKISPIDFLSGFYTNEDISITVQVESLHCLAFLCSEPDDRLLLQLLFSFPSLLVPLASDSQDLRIASMGCIEGLSALSHRADYLSKKNGIS GNNANWSHFLDELLGLIVQQKRLILSDSNFLPSFLCCLLGSSRNSLLVPQNVEQRFDQSTKEKILAFVLGSGLQLSSFAKMMIISLLKGMGSALLHVKEA ESLLSQLLKRRRQYYFEVDRSSQKLSKTEVKILCLLLEVCAMPPSLEGHACEDYLLKALQLDGLSSEEFAIIEPCITVLQKLSAPLYSGLTTEKQELLFR ELVILFRNANGDIQNATREALMRLNITCSTVVHTIKFIFEQESRIGGSASGKKKRKSIVHQTSTLDGDVVCKVETALCLLSSLLDILILKKDIASREHLI GPLFKLLEKIFSDDWMPARDENWIKASYGVSQTGSSTICYTQQTLLLVLEDIIGSLKNVIPLKDDITNKINIKLLIMCARSAKHGVVRNHVFSLLSSIVK VVPENIMGYILDIFTVAGESTVSQIDSHSQHVFEDLISAVVPCWLAETRNTDKLLQVFVNVLPKIAEHRRLSIVVYLLRTLGEHNSLASLLALLFRSLVS RKGLSLLDETNDLTSSAEREWEYAFAIRICEQYSCRIWLPSLVPLLQLIGAGNSCQEIFMELLFATEFILHKLEDPEFSFKLDSSEDSDKIQETLQELLE HVVCLSQLSDLRRKQINVPVRVRKEMKECMHGVLRSTTAVMIPSAYFRGIISLLCNSDGNVKKKALGLLSETLKKRESIKTKHKGRRDSIASSITDWFHV DGSTLDSFQQMCLEIARLIDDTMDDSDTSLKLSAVSTLEVLAHRFSSNYSVFSMCLPSITKGICSNNLAISSSCLRTTGALVDALGPRAFVQLPQIMENV IKTSSKFSAALSLPEESLMLSILLALEAVVDKLGGFLNPYLEDIIRLVVHGPEYTSGSKMKLRQKADAVRKLLTEKIPVRLALPPLLKMYPDTVEAGDSS LAVFFEMLGSLVGTMDRSSVGGYNETIFDLCLRALDLRRQHPVSIQNIDLVEKSIINAMIALTMKLTETMFKPLFIRSIEWAESYVEENDSKDNVIDRAI SFYGLVNKLAENHRSLFVSYFEYLLEGCVRHLTNIVKPKGAGLIQKKKKAKIQEAGSDIKENSVLTLKSWHLRALVISALHKCFLYDTGSRKFLDSSKFQ VLLKPIVSQLIAEPPALLEEHPSIPSVNEVDELLVVCIGQMAVTAGTDLLWKPLNHEVLLQTRSDKIRSRILGLRIVKYLMDNLKDEYLVFLPETIPFLG ELLEDLELPVKSLAQDVLKEMESMSGESLQQYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	0	1
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	1.41	0.9122
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	1.73	0.9146
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	3.00	0.8885
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	3.16	0.8483
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	4.58	0.8377
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	4.89	0.8508
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	7.34	0.8231
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.003G056700 [exp]	8.36	0.7688
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	9.79	0.8293	APC1.1
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	10.19	0.8061

Compare expression of checked genes

Potri.003G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.