Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51220 384 / 2e-135 ubiquinol-cytochrome C chaperone family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042991 [exp] 396 / 7e-140 AT5G51220 365 / 8e-128 ubiquinol-cytochrome C chaperone family protein (.1) Lus10032494 [exp] 343 / 3e-120 AT5G51220 301 / 3e-104 ubiquinol-cytochrome C chaperone family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03981 [poplar] [flax] Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone
Representative CDS sequence Show only first row Show all	>Potri.003G151600.1 pacid=42784876 polypeptide=Potri.003G151600.1.p locus=Potri.003G151600 ID=Potri.003G151600.1.v4.1 annot-version=v4.1 ATGTTAGCAAGATGCAGCAGAGCAGCTGCTTCTCATTTCTTTCATCAACTCAGAAACAACAACAACAGTAAAGATGCTGCCTTTAAATTTATTTCACACC AAAGCTATGCCAAGGCTGCCACAGCGGCAGCAATGGCAGCTTCTCCAATTCTCTCGTCACAGAAGGTTTTCCCCAGCAATTCAGTGGTGAATTTGGATAA AATGTTTCGGTCTAAGCCTTGTTCTTTGGCTTTGGCTCCGGACTCTCCACTCAGAATCGAAGAGCCAGAGTATGAGGGAATTAGGCGTTTTGTGCTCAAG TTGTTGCTGTTTTATAGTAAACAAAGTAAGTCTATTCGAGGAGCTAATGTGGTGTACCGAAGAATTGTGTCACAAGTAGATAGACCTGCCATTTATGAAG TATTCAACTTGGAGAAGACATTTAAAATGACATTCTCATTGCTTGTACTCCACATGTGGCTTTGCTTACGTCGATTGAAACAAGAGGGAAAAGAAGGTGT TGAATTCGGGCAATACATATACGAGATTTACAATCATGATGTGGAGTTGAGAGTATCTAAAGCAGGGGTTAACTTGCTTCTGACCAAATGGATGAAAGAA TTGGAGAAAATATTATATGGAAATATTGTTGCTTATGACGCTGCCATGCTTCCCGAGGCTAAACCAGATGAGCTTCCAAAGGTGATATGGAGGAATGTCT TTTCAGATGATGGTACAACTGAGCCAGATGATACTGCATCACAGGCTATTCAGGCAATGGCCAGGTATGTGCGCCATGAAGCTAGTTGTCTTTCCTTAAC TGACAAAGAAGCAATGTTTTCTGGGAATTTCATGTTCACCTCCTTGGAGAACCTGTCATCTCATGCAAGAAGATAA
AA sequence Show only first row Show all	>Potri.003G151600.1 pacid=42784876 polypeptide=Potri.003G151600.1.p locus=Potri.003G151600 ID=Potri.003G151600.1.v4.1 annot-version=v4.1 MLARCSRAAASHFFHQLRNNNNSKDAAFKFISHQSYAKAATAAAMAASPILSSQKVFPSNSVVNLDKMFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLK LLLFYSKQSKSIRGANVVYRRIVSQVDRPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGKEGVEFGQYIYEIYNHDVELRVSKAGVNLLLTKWMKE LEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGTTEPDDTASQAIQAMARYVRHEASCLSLTDKEAMFSGNFMFTSLENLSSHARR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51220			ubiquinol-cytochrome C chapero...		Potri.003G151600 [exp]	0	1
					Potri.007G105401 [exp]	25.39	0.8752
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140800 [exp]	27.92	0.9038	GSTA.1
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Potri.009G064500 [exp]	60.79	0.8767
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	75.01	0.8950
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.001G087600 [exp]	106.98	0.8779
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Potri.008G017900 [exp]	117.24	0.8716
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	123.43	0.8870
AT4G25040			Uncharacterised protein family...		Potri.012G104300 [exp]	155.84	0.8606
AT4G38490			unknown protein		Potri.004G177800 [exp]	219.24	0.8642
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	221.72	0.8632

Compare expression of checked genes

Potri.003G151600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.