Plant FIBer expression Database

Potri.003G151750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G078800
[exp]
44 / 1e-05 AT4G24250 549 / 0.0 MILDEW RESISTANCE LOCUS O 13, Seven transmembrane MLO family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G151750.1 pacid=42786989 polypeptide=Potri.003G151750.1.p locus=Potri.003G151750 ID=Potri.003G151750.1.v4.1 annot-version=v4.1
ATGTTCCTGGCAACTTTCAAATTCTTCTTCCAGACTATCAGGAAACACGGAGTATGGAGGATGAACCCAAATCTCCGCAGTACACACCGACATGGGTGGT
TGCTGCTGTCTGCTTTGTTATTGCTCTCGCCACCATTTTTGCTGAGCGTGTTCTTCATAATTAAACTGTTTGATTTTTCAAGTTCTATGCAGTTACCCCA
CCTTGCCTTTGTATGCTGTAGTATCCCAGGTTCAAGATGGACAGGCATGTTTGTTGAGGAAGTGCAGTTAGCATTTGGTCGGGAAGCTCAGGATGGACCG
CGAGGGGCCCAAACGACCATCACGGAGCATATAGCCACAGAATCGGCTCACAGTGCGGGGCAAGCTTTCTTCTGCAACCCAAGCGCCTGCATCTTGAAAT
TTGGTTGTTCGGTAAAAAGAAAAAAAAGGACGCCCACTTACATCTCCTAA
AA sequence
>Potri.003G151750.1 pacid=42786989 polypeptide=Potri.003G151750.1.p locus=Potri.003G151750 ID=Potri.003G151750.1.v4.1 annot-version=v4.1
MFLATFKFFFQTIRKHGVWRMNPNLRSTHRHGWLLLSALLLLSPPFLLSVFFIIKLFDFSSSMQLPHLAFVCCSIPGSRWTGMFVEEVQLAFGREAQDGP
RGAQTTITEHIATESAHSAGQAFFCNPSACILKFGCSVKRKKRTPTYIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24250 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, ... Potri.003G151750
[exp]
0 1
AT1G54820 Protein kinase superfamily pro... Potri.013G025700
[exp]
2.23 0.8614
AT2G03810 18S pre-ribosomal assembly pro... Potri.015G048400
[exp]
2.82 0.8480
AT1G03790 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-... Potri.017G013400
[exp]
3.87 0.8202
AT3G55700 UDP-Glycosyltransferase superf... Potri.010G195600
[exp]
6.00 0.8073
AT1G08510 FATB fatty acyl-ACP thioesterases B... Potri.018G072700
[exp]
6.63 0.7416
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.016G014700
[exp]
7.74 0.7412
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.006G011400
[exp]
8.77 0.6692
Potri.014G094600
[exp]
9.64 0.6976
AT4G31560 HCF153 high chlorophyll fluorescence ... Potri.003G203300
[exp]
24.73 0.8208
AT4G25960 ABCB2, PGP2 ATP-binding cassette B2, P-gly... Potri.001G139700
[exp]
40.98 0.7144

Potri.003G151750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.