Plant FIBer expression Database

Potri.003G152200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G077400
[exp]
91 / 3e-23 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G152200.1 pacid=42786255 polypeptide=Potri.003G152200.1.p locus=Potri.003G152200 ID=Potri.003G152200.1.v4.1 annot-version=v4.1
ATGGACCGTACAACTTTGTCTGCGAACTTGAAGGATGCTAATAATCAGAAAGTGAAAAAGAGAAAAAACAGAGAGTGTACGAAATATGCAAAGAAAACGA
AGATGATTCAGCATTCCTTACGTGCTATTGGTGAGGAAATTGAGGAGAACGAGGAGGAAAATGGTTCCATTCTTCAGATGCTGCAACGAAAGCAGCTTGA
GATCAAACAGCAGGAAGCTGACTTCTGTGATTCGCAGAACAAAATAATCACTGCACATGAAAACTGTGTAGGTGCGTTGTTGCAAGAGCTATTAGTCCAA
TACCTCATGGCGGGATCTAACCAGCTAGAAATTGCACAATGTGTTATGTTTTCTCCAAATGCCAATTCGGATGATAGGATTCCATCCGAGGATGGCATCG
TTGAATTGAAACATCGTTCTAAGATGTCGGTTAAGCAGATTGAAGTTTTATGCAAAATCTTGACAGGATGA
AA sequence
>Potri.003G152200.1 pacid=42786255 polypeptide=Potri.003G152200.1.p locus=Potri.003G152200 ID=Potri.003G152200.1.v4.1 annot-version=v4.1
MDRTTLSANLKDANNQKVKKRKNRECTKYAKKTKMIQHSLRAIGEEIEENEEENGSILQMLQRKQLEIKQQEADFCDSQNKIITAHENCVGALLQELLVQ
YLMAGSNQLEIAQCVMFSPNANSDDRIPSEDGIVELKHRSKMSVKQIEVLCKILTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G152200
[exp]
0 1
AT5G61030 GR-RBP3 glycine-rich RNA-binding prote... Potri.012G061600
[exp]
5.00 0.8443
AT4G05160 AMP-dependent synthetase and l... Potri.017G112800
[exp]
7.07 0.8266
AT1G29510 SAUR68 SMALL AUXIN UPREGULATED 68, SA... Potri.002G064300
[exp]
8.77 0.7874 SAUR61
AT1G61065 Protein of unknown function (D... Potri.004G038700
[exp]
10.90 0.7811
AT2G38730 Cyclophilin-like peptidyl-prol... Potri.003G194500
[exp]
13.71 0.8102
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Potri.014G097100
[exp]
14.49 0.7875
AT5G35732 unknown protein Potri.014G162400
[exp]
15.36 0.7417
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.004G094100
[exp]
17.32 0.7680
AT2G39805 Integral membrane Yip1 family ... Potri.008G060300
[exp]
19.62 0.7950
Potri.010G061000
[exp]
21.21 0.7815

Potri.003G152200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.