Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44740 774 / 0 POLH Y-family DNA polymerase H (.1.2) AT5G44750 122 / 2e-28 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) AT1G49980 103 / 7e-23 DNA/RNA polymerases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094400 [exp] 129 / 2e-30 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Potri.001G293600 [exp] 103 / 1e-22 AT1G49980 826 / 0.0 DNA/RNA polymerases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036237 [exp] 801 / 0 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2) Lus10038376 [exp] 161 / 6e-44 AT5G44740 141 / 1e-37 Y-family DNA polymerase H (.1.2) Lus10013870 [exp] 113 / 1e-25 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Lus10020986 [exp] 98 / 6e-21 AT1G49980 768 / 0.0 DNA/RNA polymerases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [poplar] [flax] IMS impB/mucB/samB family PF11799 [poplar] [flax] IMS_C impB/mucB/samB family C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G152600.1 pacid=42786754 polypeptide=Potri.003G152600.1.p locus=Potri.003G152600 ID=Potri.003G152600.1.v4.1 annot-version=v4.1 ATGCCAGTGGCTAGACCAGAGTCATCCGATTCAAGGACAAGGATCATCGCTCACGTTGACTTGGATTGCTTCTACGTTCAAGTGGAGCAGCGTAAGCAGC CCGAGTTGAGGGGCTTACCTACAGCTGTGGTGCAGTACAATGAGTGGAAAGGTGGGGCTTTGATTGCAGTTAGTTACGAGGCTCGTAAACTTGGAGTCAA TCGTCACATGAGAGGTGACGATGCAAAAGAAGTTTGCCCACAAATTCACCTGGTTCAAGTGCCTGTAGCTAGAGGTAAAGCTGACCTGAACACTTACCGC AATGCAGGTTCTGAGGTGGTGTCTATTCTGGCAAGAAAGGGTCGATGTGAGAGGGCTTCAATTGATGAAGTTTATCTTGACCTTACTGATTCAGCGGAGG CTATGCTGAGAGAAACTCCTCCAGAGAGCTTGGAATCAATAAATGAGGAATCTCGCAAATCACACATTTTGGGGCTTAAAAGTGAGGATGCAAATGATGC CCAAGAAAATGTGAGCAAGTGGTTACGTAGGAGTGATGCCAATCACCAAGACAAGTTACTAGCTTGTGGGGCCCTCATCGTGTCAGAACTTAGGATGGAA GTCTTAAAGGAAACCCAATTTACATGTTCTGCTGGCATTGCTCATAACAAGATGCTAGCCAAACTTGTAAGTGGCATGAATAAACCTGCGCAACAAACTG TTGTTCCCTCCTCATCTGTAAAAGGTTTGCTCGAATCATTGCCAATAAAGAAAATGAAACAGCTTGGAGGGAAGCTGGGGACTTCATTGCAGACTGACCT GGGTGTGAGCACTGTTGGAGACCTCCTGCAGTTTTCAGAGGAAAAGCTACAGGAACGTTTTGGCATAAATACAGGTACATGGTTGTGGAGCATTGCGAGA GGAATCAATGGGGAAGAAGTTCAGGGCCGCCTTCTCCCTAAGAGCCATGGTGCTGGGAAGTCATTTCCTGGTCCTCGTGCTTTGAAGACAATTGCTTCCG TTCAACACTGGCTGAATCAACTTTGTGATGAGCTTAATGAACGTATTTGCTGTGATTTGGACCAAAACAAGCGAATTGCACACACTTTTACTGTTTATGC TAGCGCATACAAGTCTTGCGACTCGGAATCATATAAAAAATTCCCTTCAAAATCTTGTCCATTGAGATATGGGACTGCCAAGATTCAAGAGGATGCATTT AATCTATTTCAAGCTGGATTACGTGAATATATAGGTTCACACGGAGTCAAAACACTAGGTCATCATCACAACGGATGGGGAATAACTTCTCTTTCTGTTT CAGCAAGTAAAATTGTTGCTATACCATCTGGAACAGGTTCGATCACAAAATACTTTCATGGACAGTATACATCACCCTCTTCAAAGGAAACAAAGGATAG CTTTGTCAAAGAAGCCATGCCATTATCACCGTCAGGCAGTGAAAGCTATTCGGAGCTGGAACCAACTGATCAGCTGCAACCTGAGAATAATGTACCGTGT TTGGGTCTACAAGAACAGAAAAGAATTCCATGGAAAGATCAGGATTCATCTTGTTCTTCAACAGTGCAGACAAAGGATGGTAGTGGCAAGGGAGCCTCAC CATCATCACCCTCAGGAAGTGGATGTTGCTCACTTGTAAACCAAACCGGCTCTCAGGGAGCCTCCAGGGTTGATTCTACCATGCCTACTTTGGAACGACA TAAAAGGAAAATAAAACCTTCTGATAAGGGAACAATTTTGAAATTCTTGAAGAGCTACAATCTCTCGGGCTCCACACCGATGCAGGAGAATGTTGAAATG GTTAAAGGCTCTCAATCTCCAAGTTGCAGCAGCTTGGAAGTGAATCAAGCTGAGCTGCCAAGACGGAGTCTTGCAGAATGTAGTACGAATGATGGCAGCA ATAATTTGGATCAAAATGCACAAAGGGCATGGAATTACAAGATCGACGAGATTGATCACTCTATTGTTAATGAGTTGCCATCAGAAATCCAAGATGAAAT TCGGGTCTGGCTCCAGGCTCGTCAGCAACCTAGTATGGTTAAACGTCCTAGTATAATTAAACGAGGTTCTATTGCCCATTATTTCTCCCCAGACAGAAAT ACATAG
AA sequence Show only first row Show all	>Potri.003G152600.1 pacid=42786754 polypeptide=Potri.003G152600.1.p locus=Potri.003G152600 ID=Potri.003G152600.1.v4.1 annot-version=v4.1 MPVARPESSDSRTRIIAHVDLDCFYVQVEQRKQPELRGLPTAVVQYNEWKGGALIAVSYEARKLGVNRHMRGDDAKEVCPQIHLVQVPVARGKADLNTYR NAGSEVVSILARKGRCERASIDEVYLDLTDSAEAMLRETPPESLESINEESRKSHILGLKSEDANDAQENVSKWLRRSDANHQDKLLACGALIVSELRME VLKETQFTCSAGIAHNKMLAKLVSGMNKPAQQTVVPSSSVKGLLESLPIKKMKQLGGKLGTSLQTDLGVSTVGDLLQFSEEKLQERFGINTGTWLWSIAR GINGEEVQGRLLPKSHGAGKSFPGPRALKTIASVQHWLNQLCDELNERICCDLDQNKRIAHTFTVYASAYKSCDSESYKKFPSKSCPLRYGTAKIQEDAF NLFQAGLREYIGSHGVKTLGHHHNGWGITSLSVSASKIVAIPSGTGSITKYFHGQYTSPSSKETKDSFVKEAMPLSPSGSESYSELEPTDQLQPENNVPC LGLQEQKRIPWKDQDSSCSSTVQTKDGSGKGASPSSPSGSGCCSLVNQTGSQGASRVDSTMPTLERHKRKIKPSDKGTILKFLKSYNLSGSTPMQENVEM VKGSQSPSCSSLEVNQAELPRRSLAECSTNDGSNNLDQNAQRAWNYKIDEIDHSIVNELPSEIQDEIRVWLQARQQPSMVKRPSIIKRGSIAHYFSPDRN T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Potri.003G152600 [exp]	0	1
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	9.00	0.8692
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.013G110450 [exp]	12.44	0.7601
					Potri.001G261304 [exp]	16.27	0.6844
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Potri.002G090400 [exp]	16.52	0.8601	KOM.1
AT2G18420			Gibberellin-regulated family p...		Potri.005G239000 [exp]	19.28	0.8027
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	19.79	0.8763
AT5G28910			unknown protein		Potri.019G019800 [exp]	23.13	0.7894
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	23.40	0.7705
AT1G15780			unknown protein		Potri.003G025500 [exp]	27.65	0.7611
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	28.24	0.7847	AGO902

Compare expression of checked genes

Potri.003G152600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.