Plant FIBer expression Database

Potri.003G154301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G154301.4 pacid=42784936 polypeptide=Potri.003G154301.4.p locus=Potri.003G154301 ID=Potri.003G154301.4.v4.1 annot-version=v4.1
ATGTCTAACTTAGAGCTATCTGATGATTCTGATGCCGTGGGAAACTACACCAACGAGTTTGGAGATCGTAGTGATGCAGAGAACCGTGGAATATTGTTGA
ATGATCAAATTCCCGGCCTGCGCCAAGCAGATGAATCAGATGGAGCAAACAAGTCCCCCCCGGGGATATCTATCGATGGTGCACCCTCGAACATCTTGAA
TGTTGCTTCCAAAAAATTGAGGAAAAGAAAATTTGGCACGAGCAATGGTGGAAAACAGCAGAAAGTGAAGATAGACAAAAAAAATAGATTTGACGAGTTT
GGATGCAAGCGCATCAAGAATGAAAACACTTCCATGGAGGCTGAGAATGAATTACTGATGAGCAAATGTGCTCGGGCGATAAATGATCTCAATCGTAAAA
GGCAAACTTTGGAGTACGTGAAGGACAAATTGAATGAAGAGACTGCTGTGATTGCAGAGCTTTCCATGATTCTGATAAATAATGGCAGTGAGTAA
AA sequence
>Potri.003G154301.4 pacid=42784936 polypeptide=Potri.003G154301.4.p locus=Potri.003G154301 ID=Potri.003G154301.4.v4.1 annot-version=v4.1
MSNLELSDDSDAVGNYTNEFGDRSDAENRGILLNDQIPGLRQADESDGANKSPPGISIDGAPSNILNVASKKLRKRKFGTSNGGKQQKVKIDKKNRFDEF
GCKRIKNENTSMEAENELLMSKCARAINDLNRKRQTLEYVKDKLNEETAVIAELSMILINNGSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G154301
[exp]
0 1
AT1G53190 RING/U-box superfamily protein... Potri.011G097100
[exp]
2.23 0.8598
AT2G30880 Pleckstrin homology (PH) domai... Potri.002G057300
[exp]
8.48 0.8609
AT5G59050 unknown protein Potri.009G038600
[exp]
9.94 0.8690
AT5G25220 HD KNAT3 KNOTTED1-like homeobox gene 3 ... Potri.018G114100
[exp]
18.38 0.8704
AT1G24267 Protein of unknown function (D... Potri.001G058700
[exp]
19.44 0.8131
AT2G45910 U-box domain-containing protei... Potri.014G084900
[exp]
22.27 0.8518
AT1G80360 Pyridoxal phosphate (PLP)-depe... Potri.001G177000
[exp]
23.36 0.8413
AT3G49055 unknown protein Potri.015G146100
[exp]
26.32 0.8500
AT2G04880 WRKY ATWRKY1, ZAP1 zinc-dependent activator prote... Potri.014G164300
[exp]
27.49 0.8417
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Potri.014G134900
[exp]
27.49 0.8059 NHX1.2

Potri.003G154301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.