Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20090 816 / 0 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 294 / 2e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 276 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 273 / 2e-81 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 265 / 9e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 262 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 264 / 4e-78 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 246 / 2e-72 RPF2 rna processing factor 2 (.1) AT1G63080 241 / 2e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 241 / 2e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075900 [exp] 1199 / 0 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 328 / 2e-102 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 270 / 3e-80 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 265 / 4e-79 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 265 / 7e-79 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 259 / 1e-77 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 261 / 2e-77 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 255 / 4e-76 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 251 / 6e-76 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036238 [exp] 923 / 0 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 916 / 0 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 328 / 8e-102 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 268 / 2e-79 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 254 / 2e-74 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 257 / 9e-74 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 255 / 1e-73 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 251 / 2e-73 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 252 / 3e-72 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 249 / 3e-72 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G154800.1 pacid=42784560 polypeptide=Potri.003G154800.1.p locus=Potri.003G154800 ID=Potri.003G154800.1.v4.1 annot-version=v4.1 ATGCCCAAATGCCCACCTCTCATCACCAACTCCATCTTCAAGGCCCTCAACAACTGCTTGTATCCAATCCCAAGTAAGTTCCCTTCTCTTTCCATGAGCT CTAACTTTTCAGCCCTTGCAATTCCATCAACCAAAACTATTGAAACTGAACCCCAAAGCCACCCTCTACACCGTAACGCCTCTGACCGAGAACATGGCAT TGAACATGACCCCCCGATATCTGATAAGATATTCAAGTCTGGCCCCAAAATGGGTTCGTACAAGTTGGGTGATTCGACTTTTTATTCACTCATTGACAAC TACGCAAATTTGGGTGATTTTAAGTCATTGGAGAAGGTTTTGGATCGAATGAGGTGCGAAAAGAGAGTGGTTGTAGAGAAATGTTTTGTTGTTATCTTTA AGGCTTATGGGAAAGCTCATTTACCTGAAAAAGCTGTCGGCTTGTTTGATAGAATGGCTTATGAATTTGAGTGTAAAAGAACTGTAAAGTCATTTAATTC GGTTCTTAATGTGATTATACAAGAGGGTTTGTTTTATCGTGCTTTAGAGTTTTATAATCATGTTATTGGTGCCAAAGGTGTGAATATATCCCCTAATGTG CTTACTTTTAATTTGGTTATTAAGACTATGTGTAAGGTGGGATTGGTTGATGATGCGGTCCAAATGTTTAGAGACATGCCGGTTAGTAAATGTCAGCCTG ATGTGTACACTTATTGTACATTGATGGATGGACTTTGCAAGGCGGATAGGATTGATGAGGCAGTTTCGCTGTTGGATGAGATGCAAATTGATGGTTGTTT TCCAAGCCCTGTTACCTTCAATGTGTTAATCAATGGCTTGTGTAAGAAGGGGGATTTAGCACGGGTTGCGAAGCTTGTAGACAATATGTTTCTTAAAGGA TGTGCTCCTAATGAAGTAACTTATAACACACTTATTCATGGTTTGTGTCTGAAAGGGAAGCTGGAGAAGGCAATTAGTCTTTTGGATCGGATGGTATCAA GTAAATGTGTGCCTAATGTGGTCACATATGGGACAATCATTAATGGACTTGTTAAGCAAGGAAGAGCTCTTGATGGGGCTCGTGTATTAGCTTTGATGGA GGAAAGGGGGTATCATGTAAATGAGTATGTTTACTCAGCGCTGATTAGTGGGTTGTTTAAGGAGGGGAAATCTCAAGAGGCGATGCAATTGTTCAAAGAG ATGACAGTCAAAGAATGTGAGCTCAACACTATTGTATATAGCGCTGTTATTGATGGTTTATGCCGAGATGGAAAGCCAGATGAAGCACTGGAAGTTCTTT CTGAGATGACTAATAACAGATGCAAACCTAATGCTTACACTTATAGCTCGCTGATGAAGGGATTCTTTGAGGCAGGTAATGGCCATAAAGCCATTGAAAT GTGGAAAGACATGGCAAAGCATAATTTTACTCAGAACGAGGTTTGTTACAGTGTACTCATTCATGGGTTATGCAAGGATGGGAAAGTCAAGGAGGCTATG ATGGTGTGGGCACAGATGCTGGGCAAAGGATGTAAGCCTGATGTTGTGGCTTACGGTTCAATGATTAATGGCCTTTCCAATGCTGGCTTAGTAGAAGATG CTTTGCAACTTTATAACGAGATGCTTTGTCAGGAACCTGATTCTCAACCAGATGTGGTCACATATAACATACTTTTGAATGCTTTGTGCAAGCAGAGTAG CATCTCCCGTGCTATTGATCTTTTAAATAGCATGTTGGATCGGGGATGTGATCCTGACTTGGTTACATGCATCATATTCTTGAGAACGTTGAGAGAGAAG CTGGACCCGCCTCAAGATGGGAGGGAGTTTCTAGATGGGCTTGTGGTTCGTCTTCTAAAGCGGCAGAGAGTTTTAGGTGCTTCAAAAATTGTAGAAGTGA TGCTGCAAAAGCTTCTGCCACCTAAACCCTCTACTTGGACAAGAGTTGTTGAAGATCTGTGTAACCCTAAGAAGGTTCAGGCAGCCATTCAGAAGTGTTG GAGCATCCTATATTGCTGA
AA sequence Show only first row Show all	>Potri.003G154800.1 pacid=42784560 polypeptide=Potri.003G154800.1.p locus=Potri.003G154800 ID=Potri.003G154800.1.v4.1 annot-version=v4.1 MPKCPPLITNSIFKALNNCLYPIPSKFPSLSMSSNFSALAIPSTKTIETEPQSHPLHRNASDREHGIEHDPPISDKIFKSGPKMGSYKLGDSTFYSLIDN YANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNV LTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKG CAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKE MTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAM MVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREK LDPPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLCNPKKVQAAIQKCWSILYC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	0	1
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	3.31	0.9037
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.014G179300 [exp]	3.31	0.8810
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	4.00	0.9029
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	6.32	0.8930
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.009G110400 [exp]	6.48	0.8670
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	7.54	0.8968
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	8.83	0.8749
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	8.83	0.8893
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	8.94	0.8905
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.017G149500 [exp]	10.58	0.8749

Compare expression of checked genes

Potri.003G154800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.