Plant FIBer expression Database

Potri.003G154900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30910 339 / 7e-117 Molybdenum cofactor sulfurase family protein (.1)
AT5G44720 300 / 2e-101 Molybdenum cofactor sulfurase family protein (.1.2)
AT1G16540 79 / 4e-16 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G066400
[exp]
65 / 2e-11 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018692
[exp]
364 / 1e-126 AT1G30910 432 / 2e-153 Molybdenum cofactor sulfurase family protein (.1)
Lus10007754
[exp]
357 / 6e-124 AT1G30910 435 / 1e-154 Molybdenum cofactor sulfurase family protein (.1)
Lus10031190
[exp]
78 / 9e-16 AT1G16540 1012 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Lus10031768
[exp]
76 / 8e-15 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03473 MOSC MOSC domain
PF03476 MOSC_N MOSC N-terminal beta barrel domain
Representative CDS sequence
>Potri.003G154900.4 pacid=42784490 polypeptide=Potri.003G154900.4.p locus=Potri.003G154900 ID=Potri.003G154900.4.v4.1 annot-version=v4.1
ATGTTGGACATGATGGTATTTGTCACCAGGCAAGTTGAAGAAATTTGGGTTGTTGATGGCAGTGCCTTTAATTTTTCACAAATAACAAACAGAAGATACC
TCCCGACTTCTCTCCAACTTTGTTGTTGTAGTAATAATACGAGTGCTTTTTTTTACCATTCTCAGTGGTTCATGAATCATGTTGTTGCTTCTTCTTTTTT
TCAGGCGATTTTCAGTGCAAGTATGATCCAATGTTCACTTTCTTTTACAGAAATAAAGGCTCCTGGGATGAGTGTGCTTAAGATATCTCTGATGAAGCCA
AGTGAAGTAGCGGAGGGTGTCTCGGTATGGGAGTGGTCTGGCTCTGCATTGGATGAGGGAGCTGAAGCAGCAAAATGGTTCTCAGATTATTTGGGGAAAC
CCAGTCAACTAGTACGTTTTAATGCAGCTTCAGAAACAAGGCTCATAGATCCTAATTATGCACCTGGACACAAAACTATGTTTTCTGACCTCTTTCCGTT
CATGCTGATCTCTCAGGGATCTTTGGATGCACTGAATCAGCTTCTCAGGGAACCTGTTCCTATTAATCGTTTTAGACCAAACATCCTTGTTGAAGGCTGC
GAACCATTTTCTGAGGACTTGTGGACTGAAATTAGGATAAGCAGGTTCACATTTGAAGGTGTCAAGCTATGTTCCCGCTGCAAGGTACCTACAATCAATC
AAGATACTGGGATTGGAGGGACTGAGCCAAATGAAACTCTAATGAAAATCCGATCAGATAAAGTTTTGCGCCCGGATAAGAAACAGCAGGGAAAGATCTA
TTTTGGACAGAACTTAGTTTGGAAGGAAAACCCTAGTGAAGGGCATGGAAAGATTGTTAATGTGGGAGATCCTGTTTTCGTCCTTAAGAAGGTCTCCTCT
GTAGCTGAAGCAGCAGCCTAA
AA sequence
>Potri.003G154900.4 pacid=42784490 polypeptide=Potri.003G154900.4.p locus=Potri.003G154900 ID=Potri.003G154900.4.v4.1 annot-version=v4.1
MLDMMVFVTRQVEEIWVVDGSAFNFSQITNRRYLPTSLQLCCCSNNTSAFFYHSQWFMNHVVASSFFQAIFSASMIQCSLSFTEIKAPGMSVLKISLMKP
SEVAEGVSVWEWSGSALDEGAEAAKWFSDYLGKPSQLVRFNAASETRLIDPNYAPGHKTMFSDLFPFMLISQGSLDALNQLLREPVPINRFRPNILVEGC
EPFSEDLWTEIRISRFTFEGVKLCSRCKVPTINQDTGIGGTEPNETLMKIRSDKVLRPDKKQQGKIYFGQNLVWKENPSEGHGKIVNVGDPVFVLKKVSS
VAEAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30910 Molybdenum cofactor sulfurase ... Potri.003G154900
[exp]
0 1
AT1G52343 unknown protein Potri.003G055200
[exp]
1.00 0.9305
AT1G14685 BBR_BPC BBR/BPC2, ATBPC... basic pentacysteine 2 (.1.2.3) Potri.015G032900
[exp]
1.41 0.9124 Pt-GBP.7
AT4G05160 AMP-dependent synthetase and l... Potri.017G112800
[exp]
4.47 0.8859
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Potri.001G087100
[exp]
4.47 0.8634
AT5G10030 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, ... Potri.007G079900
[exp]
4.47 0.8989 STGA1.2
AT3G26090 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALI... Potri.008G181500
[exp]
5.56 0.8312
AT3G15351 unknown protein Potri.002G142000
[exp]
6.92 0.8776
AT2G34470 PSKF109, UREG urease accessory protein G (.1... Potri.002G243500
[exp]
7.48 0.8752 Pt-EU3.2
AT5G50410 unknown protein Potri.012G097500
[exp]
8.06 0.8620
Potri.010G150601
[exp]
8.12 0.8628

Potri.003G154900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.