Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20130 679 / 0 PTAC14 plastid transcriptionally active 14 (.1) AT1G24610 54 / 2e-07 Rubisco methyltransferase family protein (.1) AT3G07670 49 / 5e-06 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134200 [exp] 59 / 4e-09 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G169300 [exp] 46 / 5e-05 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006942 [exp] 704 / 0 AT4G20130 683 / 0.0 plastid transcriptionally active 14 (.1) Lus10021783 [exp] 70 / 2e-12 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10034599 [exp] 66 / 3e-11 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10012309 [exp] 43 / 0.0005 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.003G155100.6 pacid=42787531 polypeptide=Potri.003G155100.6.p locus=Potri.003G155100 ID=Potri.003G155100.6.v4.1 annot-version=v4.1 ATGGCCTCTACTGCTCCTTTACATCACCACCTCACTCACTGCTTCTCCATCTCCCAGTGTAAAGATAAGGAGGTTTTATTACAGCATGGATGGACAGCAA GACCACCACCCAGATATTCATTCTTCAGAAACAGGGAAAACAGCATTAATCTTACCACTAGTGTCAGCAGACCCATTAAAGCTTTTTCAGTTGATATACC TTCGTATCCTCTCCTTCAACCTCCTAAAGTCGAAGAAGAGTCTGACTCTGAGTTGGAACCAGCAGACCCTGATTTTTATAGGATAGGGTATGCTCGAAGT ATGCGTGCTTATGGAATTGAATTTAAGGAAGGGCCAGATGGATTTGGAGTTTATGCTGCCAAAGATGTTGAACCACTTCGCCGTGCAAGGGTGGTTATGG AAATCCCAATAGAGTTGATGTTGAATATAAGTAAGAAGCTCCCATGGATGTTTTTTCCAGATATAATACCATTGGGTCATCCAATATTTGATATTATTAA CTCAACAGATCCAGAGACAGATTGGGACCTGCGGTTAGCATGTCTTCTTTTATTTGCATTTGATTGCGAGGATAACTTTTGGCAGCTATACAGTGACTTT TTACCTAGTGCGGATGAGTGCCCCAGCTTGCTTCTAGCAACAGAGGAGGACCTTTTGGAGCTCCAGGATGAGAATCTTGCATCAACTATGAGAAAACAGC AACTCCGAGCCTTGGAGTTTTGGGAAAAGAATTGGCACTCTGGTGCTCCACTCAAAATAAAGCGCCTTGCTCGTGATCCTGAGAAATTTATTTGGGCAGT TAGTATGGCACAATCACGGTGCATTAACATGCAAATAAGGGTCGGTGCTTTAACTCAAGATACGAATATGCTGATTCCTTATGCTGACATGCTAAACCAT TCCTTTGAGCCAAACTGTTTTTTCCATTGGCGATTCAAGGATCGCATGCTTGAGGTTATGATAAATGCCGGGCAACAGATAAGGAAAGGAGAAGAGATGA CTGTCAATTACATGAGCGGACAGAAGAATGACATGTTCATGCAACGATATGGTTTTTCATCACCAGTGAATCCTTGGGATGTAATCCGATTTTCTGGCAA TGCACGCATACATTTGGATTCTTTCCTGTCAGTCTTCAATATATCTGGCCTGCCTGAAGAATATTGTCATAACACAGGTCTGCTATCCAAAGAGGGAGAT GCTTTTGTTGATGGAGCTGTTATAGCAGCAGCAAGAACGCTGCCCACTTGGTCAGATGGAGATCTGCCTCCTGTCCCAAGCATAGAAAGGAAAGCTGTGA AGGAGTTGCAAGAAGAATGCCAGAAGATGCTAGCAAAATTTCCTACAACTTCTAAGAAAGACCTGAAAATACTAGATTCTATGCCAGAAGCGACGAGGAC CCTCGAAGCTGCAATCAAGTATAGACTGCACCGGAAGTTGCTTATTGAGAAGGTCGTCCAGGCATTGGAAATGTATCAAGAGCGCATATTGTTTTAA
AA sequence Show only first row Show all	>Potri.003G155100.6 pacid=42787531 polypeptide=Potri.003G155100.6.p locus=Potri.003G155100 ID=Potri.003G155100.6.v4.1 annot-version=v4.1 MASTAPLHHHLTHCFSISQCKDKEVLLQHGWTARPPPRYSFFRNRENSINLTTSVSRPIKAFSVDIPSYPLLQPPKVEEESDSELEPADPDFYRIGYARS MRAYGIEFKEGPDGFGVYAAKDVEPLRRARVVMEIPIELMLNISKKLPWMFFPDIIPLGHPIFDIINSTDPETDWDLRLACLLLFAFDCEDNFWQLYSDF LPSADECPSLLLATEEDLLELQDENLASTMRKQQLRALEFWEKNWHSGAPLKIKRLARDPEKFIWAVSMAQSRCINMQIRVGALTQDTNMLIPYADMLNH SFEPNCFFHWRFKDRMLEVMINAGQQIRKGEEMTVNYMSGQKNDMFMQRYGFSSPVNPWDVIRFSGNARIHLDSFLSVFNISGLPEEYCHNTGLLSKEGD AFVDGAVIAAARTLPTWSDGDLPPVPSIERKAVKELQEECQKMLAKFPTTSKKDLKILDSMPEATRTLEAAIKYRLHRKLLIEKVVQALEMYQERILF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20130		PTAC14	plastid transcriptionally acti...		Potri.003G155100 [exp]	0	1
AT3G07800			Thymidine kinase (.1)		Potri.016G009951 [exp]	11.48	0.8222
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	22.00	0.8739
AT5G24490			30S ribosomal protein, putativ...		Potri.012G005800 [exp]	26.26	0.8600
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	26.53	0.8583
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	29.34	0.8473	Pt-NADK2.1
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	30.19	0.8602
AT3G22210			unknown protein		Potri.006G021100 [exp]	35.98	0.8641
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.014G045600 [exp]	40.21	0.8616
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.004G172300 [exp]	45.74	0.8112
AT2G04790			unknown protein		Potri.014G162700 [exp]	52.86	0.8560

Compare expression of checked genes

Potri.003G155100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.