Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30900 923 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 907 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 803 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT2G14740 780 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 775 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 761 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 751 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G21210 47 / 6e-05 WAK4 wall associated kinase 4 (.1) AT1G21250 45 / 0.0002 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21230 45 / 0.0002 WAK5 wall associated kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075600 [exp] 1122 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G294400 [exp] 786 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.016G137300 [exp] 781 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.009G088900 [exp] 780 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.006G108800 [exp] 778 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 169 / 9e-50 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 149 / 5e-42 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.009G157201 [exp] 44 / 0.0003 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2) Potri.004G191450 [exp] 44 / 0.0005 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006944 [exp] 951 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10012366 [exp] 783 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10020967 [exp] 783 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 759 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10025136 [exp] 756 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10022737 [exp] 750 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 738 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025220 [exp] 582 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 320 / 8e-103 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0001 [poplar] [flax] EGF PF12662 [poplar] [flax] cEGF Complement Clr-like EGF-like
Representative CDS sequence Show only first row Show all	>Potri.003G155200.5 pacid=42784775 polypeptide=Potri.003G155200.5.p locus=Potri.003G155200 ID=Potri.003G155200.5.v4.1 annot-version=v4.1 ATGGCGATGATCACTTGCATGACTGCTTCTCTGAAGAAACTCGTGTCTTTGTTTCTTGTAATAACATTTATAGGGAAGAGTTGTGTGTTTGGTCATTTTG TGGTAGAGAAGAGTAACATAAGAGTGCTTTCTCCTCTGAGTTTGATGTCAAAACATGACAGTGCAATAGGTAACTTTGGTATACCAGATTATGGTGGCTA CTTGGTTGGTTCTGTTGTGTATCCAGATAAAGGAGCTTATGGTTGTCAGGCTTTTGATGGTGGTAAACCCTTCAAGTCTAAAGGCTCTCGCCCAACTGTT CTACTTCTTGACCGTGGAGAGTGCTACTTTGCCTTGAAAGCATGGAATGCTCAACAAGCTGGAGCTGCAGCAGTGCTAGTGGCCGATAACATAGACGAGA CTCTAATAACCATGGATTCTCCAGAGGTGAGCAATGACGCTGACGGGTATGTAGAGAAGATTGGAATCCCATCAGCTTTCATAGAGAAGTCATTTGGAGA GAGCTTAAAGGAAGCCTTGAAGAATAAAGAAGACGTGGTCATAAAATTGGACTGGAGAGAGTCAGTGCCCCATCCTGATCAGAGAGTTGAGTATGAGCTT TGGACGAACAGCAATGACGAATGTGGTGCTCGATGTGAAGAGCAGATGGATTTTGTGAAGAATTTCAAAGGTCATGCTCAGATCCTCGAAAGAGGGGGAT ACACTCTATTCACTCCACACTATATTACTTGGTATTGTCCTCAGGCTTTCATTCTTAGCAGTCAATGCAAATCTCAATGCATAAACCATGGAAGATACTG TGCTCCTGATCCAGAACAGGATTTTGGGGTGGGATATCAGGGGAAGGACGTGGTATTTGAGAACTTGAGGCAGCTTTGTGTCCATAGAGTTGCTAATGAG AGTGGAAGGTCTTGGGTTTGGTGGGATTATGTGACAGATTTCCATTTCAGGTGTTCTATGAAGAACAAGAGATATAGCAAAGAATGTGCTGAAGACGTTT TGAAATCACTTGATTTGCCTGTTGAGAAGATCGAAAAATGCATGGGTGATCCTGAGGCTGATGTGGAGAATGAAGTGCTCAGTATTGAGCAGGAACTGCA GGTAGGACGAGGATCTCGTGGTGACGTTTCCATCTTGCCAACATTGGTGATTAATAATGTTCAATACCGAGGAAAATTGGAGAGGACCGCGGTGCTGAAG GCCATATGTTCTGGATTTAAGGAGACCACTGATCCTCCAGTTTGTTTAAGTTCTGAACTTGAGACTAATGAGTGTCTCGAAAGGAATGGAGGCTGTTGGC AGGACAGAGAATCTAACACGACCGCTTGCAAGGACACATTTAGGGGAAGGGTGTGTGAATGTCCAGTTGTGAATGGTGTTCAGTTTGCAGGAGATGGTTA TGTGTCTTGTACAGCTATTGGACCTGGAAGGTGTGCAATAAACAACGGAGGATGCTGGTCAGAAACAAGACATGGATTAAGTTTCTCAGCTTGCTCAAAC TCCCTGCTATCTGGTTGCCAATGCCCACAAGGGTTTCGGGGGGATGGTCACACATGCGAAGATATTGATGAATGTACCGCGCACACTGCTTGTCAATGTG ATGGTTGCTCCTGTAAGAATAAGTGGGGTGAATATGAGTGCAAATGTAAGGGGAACCTCATTTATATAAAGGAGCAAGATGCTTGTATTGAAAGAAGCGG ATCCAAATTTGGATGGTTCCTCACCCTTGTGATCCTTGCTGTTGTGACTGGAGCTGGCATTGCTGGTTATATATTCTACAAATACAGGCTTCGGTCTTAC ATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTTGACAACAACCAGAACAATGAAGCTTCAACCGAAGCCCAGCCACTACGGCATGGCG CAATGGTGTAA
AA sequence Show only first row Show all	>Potri.003G155200.5 pacid=42784775 polypeptide=Potri.003G155200.5.p locus=Potri.003G155200 ID=Potri.003G155200.5.v4.1 annot-version=v4.1 MAMITCMTASLKKLVSLFLVITFIGKSCVFGHFVVEKSNIRVLSPLSLMSKHDSAIGNFGIPDYGGYLVGSVVYPDKGAYGCQAFDGGKPFKSKGSRPTV LLLDRGECYFALKAWNAQQAGAAAVLVADNIDETLITMDSPEVSNDADGYVEKIGIPSAFIEKSFGESLKEALKNKEDVVIKLDWRESVPHPDQRVEYEL WTNSNDECGARCEEQMDFVKNFKGHAQILERGGYTLFTPHYITWYCPQAFILSSQCKSQCINHGRYCAPDPEQDFGVGYQGKDVVFENLRQLCVHRVANE SGRSWVWWDYVTDFHFRCSMKNKRYSKECAEDVLKSLDLPVEKIEKCMGDPEADVENEVLSIEQELQVGRGSRGDVSILPTLVINNVQYRGKLERTAVLK AICSGFKETTDPPVCLSSELETNECLERNGGCWQDRESNTTACKDTFRGRVCECPVVNGVQFAGDGYVSCTAIGPGRCAINNGGCWSETRHGLSFSACSN SLLSGCQCPQGFRGDGHTCEDIDECTAHTACQCDGCSCKNKWGEYECKCKGNLIYIKEQDACIERSGSKFGWFLTLVILAVVTGAGIAGYIFYKYRLRSY MDSEIMAIMSQYMPLDNNQNNEASTEAQPLRHGAMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	2.00	0.9479	OMT1.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	2.44	0.9457	Pt-SAM1.1
AT3G03550			RING/U-box superfamily protein...		Potri.013G073500 [exp]	3.16	0.9281
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	3.60	0.9113	C4H1,Pt-CYP73.3
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	3.74	0.9226	Pt-RIC2.2
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	3.87	0.9334
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	4.24	0.9195
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	4.47	0.9298
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	5.83	0.9053
AT2G40410			Staphylococcal nuclease homolo...		Potri.008G074800 [exp]	6.16	0.8907

Compare expression of checked genes

Potri.003G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.