Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 308 / 1e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33350 284 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 281 / 2e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 278 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 275 / 5e-87 MEF21 mitochondrial editing factor 21 (.1) AT4G37380 277 / 9e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 272 / 7e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 273 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 266 / 2e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 267 / 5e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369900 [exp] 323 / 2e-104 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 312 / 3e-101 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G065500 [exp] 306 / 5e-98 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 295 / 9e-95 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 296 / 2e-94 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G110800 [exp] 289 / 2e-92 AT5G61800 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 290 / 5e-92 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 290 / 9e-91 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G054400 [exp] 281 / 2e-89 AT1G09220 487 / 8e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038396 [exp] 467 / 5e-163 AT5G66520 286 / 2e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 305 / 2e-97 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 301 / 4e-96 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 293 / 7e-93 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039974 [exp] 287 / 2e-91 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031430 [exp] 282 / 3e-91 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008825 [exp] 285 / 1e-90 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010901 [exp] 278 / 1e-89 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 283 / 3e-89 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010183 [exp] 273 / 2e-86 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G155600.1 pacid=42784599 polypeptide=Potri.003G155600.1.p locus=Potri.003G155600 ID=Potri.003G155600.1.v4.1 annot-version=v4.1 ATGCTAGTTCCTCTCTCACACTTCCTCAAATCCACAAAATGGCAAATCCCCAGAAAAAGCTACAACACATGGGTTTTAGCCATAAAAAACGCCTCTTCTC CTCACAAAGCATTGCAACTCTACACTCATATGCACCGCCAATCCATACCTTTTGATACCTTCTCAATACTCTTTACTCTAAAATCATGTACCCATCTCAA GAACCTCACGATAATTCACCACTTGCATTCCCATATAATCAAACTTGGCTTCAATACACATGTTTATGTTTCCACTTGCCTCCTGCATGCATACGCTGTC ATGTCGTTTGATCAAGCGTGTGATTTGTTCGATGAAATGCCTCAGAGAAATATAGTTACATGGAACACGATGATTACTGGGTATTCAAGGTCAGGGAGTA TCAATAAAGCACGTTCTCTTTTTGAGGCTATGCCTGTGAGGGATGCAGCTTCATGGTCCGCCATGATTACCTGTTATATTAATAATGGGTTTCGGGATCA AGGGTTGTCATTTTTTCAAGAAATGATGGCTAATGAGAACCCAAAACCAGACCAAGTGACTGTAGGTTCTGTTTTATCGGGTTGTGCACACATGGGTTCT CTTGGATTGTTAGCTGGGAAATCAGTTCATGGCTTTGTAGTGAAGAATGGGTGGGAGTTGAACGTGGATATTGGCACGCTTCTTGTTGACATGTATGCCA AGTGTGGATTCTTTAAGAATGCTGTCTGGGTTTTTGTTTTGATGCAAGAAAGAAATGTCTCGACTTGGACTGCATTGATATGTGGTGCAGCGCAACACGG CTTTTGTCAAGAGGTGTTATCGTTGTTTAAGATGATGCAAGAAGCAGGTGTTAGGCCTAACGAGATGACTTTCACGGGGATTCTTAATGCCTGTGCGCGT AAAGGGTTGATTGAAGAGGGTCGCAAGTATTTTAAAATGATCAAAGAGACTGGTTTGGAGCCTAGAATTCAGCATTATGGATGCATGGTTGATATGTTTG GTAAGGCAGGGTTGTTAGAAGAAGCTTATGAGGTTATTAAAGAGATGGAATTTGAGCCTAACATTGTCATCTGGGGTTCCTTTTTATCAGCGTGCAAGAT GCATAAGCAATTTGACATCGCTGATAGAGTGATAGGGCAGGTCTTGAGGGATATAAAACCAGAGAATGATGGAGGGATTTATAGTCTTGTATCTGATTTG TATGTTTTAAATAAGAAATGGGATGATGCAGAAAGGGTGAGGAACTTAGTGCTTAACCAAAATGTGAGAAAAGCCAGGGGCTCTAGTTGTATCTGA
AA sequence Show only first row Show all	>Potri.003G155600.1 pacid=42784599 polypeptide=Potri.003G155600.1.p locus=Potri.003G155600 ID=Potri.003G155600.1.v4.1 annot-version=v4.1 MLVPLSHFLKSTKWQIPRKSYNTWVLAIKNASSPHKALQLYTHMHRQSIPFDTFSILFTLKSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHAYAV MSFDQACDLFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMITCYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSGCAHMGS LGLLAGKSVHGFVVKNGWELNVDIGTLLVDMYAKCGFFKNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPNEMTFTGILNACAR KGLIEEGRKYFKMIKETGLEPRIQHYGCMVDMFGKAGLLEEAYEVIKEMEFEPNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSLVSDL YVLNKKWDDAERVRNLVLNQNVRKARGSSCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	0	1
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	4.47	0.8905
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	6.40	0.9123
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	6.48	0.8843
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	15.29	0.8692
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	18.22	0.8809
AT4G38150			Pentatricopeptide repeat (PPR)...		Potri.004G209500 [exp]	19.39	0.8290
AT5G63150			unknown protein		Potri.012G090700 [exp]	19.89	0.8361
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	19.89	0.8459
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	20.49	0.8806
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	21.16	0.8754

Compare expression of checked genes

Potri.003G155600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.