Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02270 503 / 0 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT1G03905 266 / 4e-88 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 265 / 5e-88 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G25450 49 / 2e-06 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT1G02530 47 / 1e-05 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 47 / 2e-05 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G41700 46 / 2e-05 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT1G10680 45 / 9e-05 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 43 / 0.0003 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28390 42 / 0.0005 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086000 [exp] 595 / 0 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.005G226600 [exp] 273 / 6e-91 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G036300 [exp] 270 / 2e-89 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G073100 [exp] 49 / 2e-06 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 48 / 6e-06 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.016G093600 [exp] 47 / 2e-05 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.018G087100 [exp] 47 / 2e-05 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G051000 [exp] 44 / 9e-05 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.006G123900 [exp] 44 / 0.0001 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023792 [exp] 505 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 508 / 4e-177 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 494 / 2e-176 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024914 [exp] 263 / 1e-86 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 261 / 8e-86 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029905 [exp] 50 / 1e-06 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10032911 [exp] 48 / 1e-05 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004496 [exp] 46 / 2e-05 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10011498 [exp] 47 / 3e-05 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10023139 [exp] 45 / 8e-05 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.003G155800.1 pacid=42784553 polypeptide=Potri.003G155800.1.p locus=Potri.003G155800 ID=Potri.003G155800.1.v4.1 annot-version=v4.1 ATGGGCGATATGGAGCATCAAGAACCAACAATAGATATCAACGGCTTGAGATTCACGTACCCAGGAATAGACGGTCACCCACCGCCTGGGTCCAAACCGT TGATCGATGAGTTCTTTCTCACCCTCAATTCTGGTGATCGATGCCTTCTTGTTGGATCCAACGGCGCTGGGAAAACTACAATTCTGAAGATATTAGGAGG AAAACACATGGTGGAACCCCAAATGGTTCGTGTTCTAGGAAGGTCTGCTTTTCACGACACTGCTGCTTTAACTTCTTCTGGACATCTTTCTTATCTTGGA GGAGAGTGGAGGCGAGAAGTTGCTTTTGCTGGTTTTGAGGTTCCGATACAAATGGATATTTCTGCGGAGAAGATGATATTTGGGGTGGCAGGTATTGATC CTCAAAGAAGAGCTGAGCTAATCAAGGTATTGGACATTGATCTGTCATGGAGGATGCACAAGGTTTCTGATGGCCAGAGAAGGCGGGTGCAAATTTGCAT GGGTCTCCTGAGGCCATTCAAGGTTCTTCTTCTTGATGAGATAATGGTTGACCTCGATGTGCTAGCAAGGGCTGACCTTCTGAAGTTTCTAAGAAAGGAA TGTGAAGAGCGAAGTGCTACAATTATCTATGCAACACATATATTTGATGGTTTGGAGGAGTGGCCAACGCATATTTTGTATGTTGCTCATGGGAAGTTGC AATTCGCAATGCCAATGGCCAAAATAAAAGAGACTAGTAATTTGTCACTAATGAGAACAGTGGAGAGCTGGCTGAGGAAGGAAAGAGATGAGGAGAGGAA AAGAAGACAAGAGAGAAAGGCAGGAGGTCTTCCAGAATATGAAAAGCAGGTTGAGGGAAGTCGAGTGACCGGTGATCCAGCTCGTGTTGGTGCTCGTGTT ATGAACAATGGTTGGGCTGCAGGAAGGCTGCACTCCACCATTGCGGGTGAAGAGAACTTCTTCTTGAGCTCAAACAGAGTTTTGAGATAG
AA sequence Show only first row Show all	>Potri.003G155800.1 pacid=42784553 polypeptide=Potri.003G155800.1.p locus=Potri.003G155800 ID=Potri.003G155800.1.v4.1 annot-version=v4.1 MGDMEHQEPTIDINGLRFTYPGIDGHPPPGSKPLIDEFFLTLNSGDRCLLVGSNGAGKTTILKILGGKHMVEPQMVRVLGRSAFHDTAALTSSGHLSYLG GEWRREVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEIMVDLDVLARADLLKFLRKE CEERSATIIYATHIFDGLEEWPTHILYVAHGKLQFAMPMAKIKETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARV MNNGWAAGRLHSTIAGEENFFLSSNRVLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	0	1
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	2.44	0.8101
AT2G26600			Glycosyl hydrolase superfamily...		Potri.018G129500 [exp]	5.09	0.8040
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.010G110000 [exp]	9.32	0.7368
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.016G071500 [exp]	12.16	0.7050	NHL1.1
AT3G20920			translocation protein-related ...		Potri.001G257500 [exp]	14.38	0.7410
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	15.19	0.7036
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.002G036300 [exp]	16.52	0.7267	POP.2
AT2G37110			PLAC8 family protein (.1)		Potri.006G130300 [exp]	21.07	0.6752
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	28.14	0.7745
AT1G17030			unknown protein		Potri.004G062000 [exp]	28.63	0.7801

Compare expression of checked genes

Potri.003G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.