Plant FIBer expression Database

Potri.003G156000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G075201
[exp]
123 / 2e-37 ND /
Potri.012G019400
[exp]
39 / 0.0002 AT3G24770 54 / 2e-10 CLAVATA3/ESR-RELATED 41 (.1)
Potri.002G241300
[exp]
37 / 0.0005 AT3G24770 52 / 1e-09 CLAVATA3/ESR-RELATED 41 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G156000.1 pacid=42785499 polypeptide=Potri.003G156000.1.p locus=Potri.003G156000 ID=Potri.003G156000.1.v4.1 annot-version=v4.1
ATGGCTAGTGATGTAGGATCTCCCAATCTCACTTCTTTAACCATATTATTTTTCCTTCTTATCATGTTCCACACCACCATGGCCAACAAAGACCATAGAT
TCCTACTTAGTACCACAAGGGATGGAGGATATTTCAAGAAAAGCCTCATGGAGTTTTCTACTACGAGACCTGACATGGGCAATGCGAAGACAGTTTCAAA
GGCTAATGTTATCCACATTCCTCCACAGAGTAGTAGAAGGAGAGGCAGGTTTCGAGCTCATAGATCTCCATTACCATGGCAAGAAGGAATTTTCAGTGCT
AGCGCCCATGAAGTTCCTAGTGGTCCAAATCCCATTTCCAATAGGTGA
AA sequence
>Potri.003G156000.1 pacid=42785499 polypeptide=Potri.003G156000.1.p locus=Potri.003G156000 ID=Potri.003G156000.1.v4.1 annot-version=v4.1
MASDVGSPNLTSLTILFFLLIMFHTTMANKDHRFLLSTTRDGGYFKKSLMEFSTTRPDMGNAKTVSKANVIHIPPQSSRRRGRFRAHRSPLPWQEGIFSA
SAHEVPSGPNPISNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G156000
[exp]
0 1
AT3G14310 ATPME3 pectin methylesterase 3 (.1) Potri.006G256600
[exp]
6.08 0.9534 Pt-PME2.7
AT5G02140 Pathogenesis-related thaumatin... Potri.006G088100
[exp]
8.94 0.9471
AT3G45070 P-loop containing nucleoside t... Potri.017G100400
[exp]
10.58 0.8814
AT5G21090 Leucine-rich repeat (LRR) fami... Potri.001G061600
[exp]
10.72 0.9215
AT5G23100 Protein of unknown function, D... Potri.015G053000
[exp]
12.64 0.9435
AT1G79480 Carbohydrate-binding X8 domain... Potri.006G008200
[exp]
13.07 0.9471
AT1G29380 Carbohydrate-binding X8 domain... Potri.011G078500
[exp]
13.74 0.9353
AT5G51550 EXL3 EXORDIUM like 3 (.1) Potri.015G129700
[exp]
13.85 0.8919
AT1G16310 Cation efflux family protein (... Potri.010G172900
[exp]
15.09 0.8809
AT4G35770 ATSEN1, DIN1, S... SENESCENCE ASSOCIATED GENE 1, ... Potri.002G014900
[exp]
16.79 0.9399

Potri.003G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.