Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30870 352 / 9e-120 Peroxidase superfamily protein (.1) AT4G36430 259 / 8e-84 Peroxidase superfamily protein (.1) AT2G18150 258 / 2e-83 Peroxidase superfamily protein (.1) AT2G18140 256 / 1e-82 Peroxidase superfamily protein (.1) AT3G21770 252 / 4e-81 Peroxidase superfamily protein (.1) AT5G66390 251 / 8e-81 Peroxidase superfamily protein (.1) AT5G15180 247 / 3e-79 Peroxidase superfamily protein (.1) AT5G64120 243 / 7e-78 Peroxidase superfamily protein (.1) AT3G03670 243 / 1e-77 Peroxidase superfamily protein (.1) AT5G17820 240 / 9e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175100 [exp] 384 / 1e-132 AT1G30870 299 / 5e-100 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 261 / 1e-84 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 261 / 2e-84 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 260 / 3e-84 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 256 / 9e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 256 / 9e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 256 / 9e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 256 / 9e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 253 / 2e-81 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038393 [exp] 433 / 7e-152 AT1G30870 350 / 7e-120 Peroxidase superfamily protein (.1) Lus10001228 [exp] 428 / 6e-150 AT1G30870 357 / 8e-123 Peroxidase superfamily protein (.1) Lus10031548 [exp] 256 / 2e-82 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 254 / 5e-82 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10041784 [exp] 248 / 3e-79 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10027163 [exp] 245 / 2e-78 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10027164 [exp] 244 / 3e-78 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10012684 [exp] 244 / 5e-78 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10039681 [exp] 244 / 7e-78 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10007051 [exp] 240 / 1e-76 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.003G156100.1 pacid=42787346 polypeptide=Potri.003G156100.1.p locus=Potri.003G156100 ID=Potri.003G156100.1.v4.1 annot-version=v4.1 ATGAAGTGCTCTTTTTCCTTTGGTTTTCTCCTCATCCTTGTTCTTCCCTTGATTTTAGCCTCAGCCCAGGACGGAAAATATGAACGCGCGGCCTACCATG ATAATTACGAAGGAGCAGTCCAGAAAGATCAAGATTATGAGGGCCAATACCAAGATCAAGAAAAGGGTCCAGCTAAGTATGATAAAAATTATGAAAAAGA AAGAACGCCAGCACAGAATGATCAACATTACGACCAAGAAGAACAAGATTATCATGTACCTTCATTGGAGATCTCAACATTGCTGGATAACTTGCCTTCA GATGATCTGTTATCTTTTGGATACTATAGCAAGAGCTGTCCTAAAGCTGAATCCATCATTAATAAACACGTGACCAAGTGGGTTGAAGAGGACCGAACCC TTGCTGCGAGTCTCCTGAGGTTGCACTTCCATGACTGTGCCGTGCATGGTTGTGATGGCTCCATTCTGTTGAACCATGAGGGAAGTGAGAGAACATCAGA GGCAAGCAAGTCTCTTAGGGGGTTTGAAGTAATCGATGCTATCAAAGCTGAGATGGAGAAAGAGTGCCCAAGAACTGTATCGTGCGCTGACATTCTTACC GCAGCCTCTAGAGATGCTACCGTTCTTCTTGGCGGTCCATACTGGGACGTGCCCTATGGAAGGAAAGATGGGAAAGTTTCTATTGACAAGGATGCTGAAT TGGTGCCAATGGGCAGGGAAAACATCACTACCCTGATTGAATTCTACCAATCTAATGGTTTGAATGTCCTTGATTTGGTGGTTCTCTCAGGGGCACATAC AATTGGCAGGGCTACATGCGGTTCACTACAATATAGGCTGTACAACTATGCAGGAACCGGCAAACAAGATGAATCCCTTGATTATAGATACGCGAACTTC TTGAAAAGAAAATGCAGATGGGCCTCTGAGTATGTTGATCTAGATGCTACAACCCCACGGACTTTTGACAATGTTTACTACAAGAATCTTCAAGACAAGA TGGGACTTCTGCACACAGATCAATCGCTATATTCTGATTCAAGGACTTCTCCAATTGTTGATGCGTTGGCTGATGCGCCTTCCGATTTCTTCAATCACCA GTTTGCAGTGTCGATGACAAAGCTCGGCAATATTCTAGTCCCTGCAGTTCAAGACGGAGGTGAAATTCGAACCAAATGCTACTCCGTCAATTCTAATTAT TGA
AA sequence Show only first row Show all	>Potri.003G156100.1 pacid=42787346 polypeptide=Potri.003G156100.1.p locus=Potri.003G156100 ID=Potri.003G156100.1.v4.1 annot-version=v4.1 MKCSFSFGFLLILVLPLILASAQDGKYERAAYHDNYEGAVQKDQDYEGQYQDQEKGPAKYDKNYEKERTPAQNDQHYDQEEQDYHVPSLEISTLLDNLPS DDLLSFGYYSKSCPKAESIINKHVTKWVEEDRTLAASLLRLHFHDCAVHGCDGSILLNHEGSERTSEASKSLRGFEVIDAIKAEMEKECPRTVSCADILT AASRDATVLLGGPYWDVPYGRKDGKVSIDKDAELVPMGRENITTLIEFYQSNGLNVLDLVVLSGAHTIGRATCGSLQYRLYNYAGTGKQDESLDYRYANF LKRKCRWASEYVDLDATTPRTFDNVYYKNLQDKMGLLHTDQSLYSDSRTSPIVDALADAPSDFFNHQFAVSMTKLGNILVPAVQDGGEIRTKCYSVNSNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	0	1
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.002G119200 [exp]	1.00	0.9218
					Potri.014G042550 [exp]	2.44	0.8276
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.001G294300 [exp]	2.44	0.8654
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	3.00	0.8530
AT5G01680		ATCHX26	cation/H+ exchanger 26, ARABID...		Potri.016G127800 [exp]	10.09	0.7170	ATCHX27.1
					Potri.006G183333 [exp]	12.00	0.7264
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144500 [exp]	26.32	0.7066
AT1G80960			F-box and Leucine Rich Repeat ...		Potri.011G098700 [exp]	31.43	0.8456
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	35.44	0.7539	CLE4.1
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.011G110100 [exp]	35.88	0.6967

Compare expression of checked genes

Potri.003G156100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.