Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 1394 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 1273 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 580 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 568 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 542 / 3e-173 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 537 / 1e-170 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 494 / 5e-156 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 493 / 1e-154 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 492 / 8e-154 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 476 / 2e-148 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075000 [exp] 1810 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G174900 [exp] 569 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 562 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 556 / 2e-178 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G053400 [exp] 555 / 4e-178 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 546 / 2e-174 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G088900 [exp] 542 / 2e-174 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G065400 [exp] 508 / 2e-159 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G120733 [exp] 503 / 2e-156 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036251 [exp] 1309 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 1069 / 0 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 516 / 2e-164 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10000509 [exp] 508 / 2e-160 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 490 / 6e-155 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017782 [exp] 490 / 1e-153 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10008849 [exp] 490 / 8e-153 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10003612 [exp] 485 / 7e-151 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10013562 [exp] 471 / 1e-147 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 470 / 5e-147 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G156200.1 pacid=42787490 polypeptide=Potri.003G156200.1.p locus=Potri.003G156200 ID=Potri.003G156200.1.v4.1 annot-version=v4.1 ATGGCGGTGCCAAAACGAGTGCTGTTGCTTTTTGCTGCTCTTTTATTTTGCTTTTCATTTGGTTTTGTTCTGTGCCAAAACCAAGAGCTGTCCAGTCTTT TGGAAGTGAAGAAATCATTTGAGGGAGACCCGGAAAAAGTTTTGCTTGATTGGAATGAAAGCAACCCGAACTTCTGTACATGGACCGGAGTTACATGTGG CTTGAACTCAGTTGATGGCTCAGTGCAAGTTGTGAGTCTAAACTTATCTGACTCATCACTTAGTGGCTCAATACCACCCTCACTCGGTAGTCTACAAAAG CTGCTCCAACTTGATCTTTCTTCTAACAGCCTCACGGGTCCCATTCCTGCTACTCTCTCAAACCTCTCTTCGTTGGAATCTTTGCTTTTGTTCTCTAACC AACTCACTGGTCCCATCCCAACTCAACTCGGTTCCCTCAAGAGTCTCCAAGTTCTGAGAATCGGTGATAATGGACTCAGTGGACCTATTCCTGCTTCATT TGGTAATCTTGTCAACTTGGTCACTCTTGGTTTGGCCTCCTGCAGTCTCACAGGTCCAATACCACCCCAGCTTGGACAGCTCAGTCAAGTCCAGAGCTTG ATTTTACAGCAGAACCAACTTGAAGGACCGATTCCTGCCGAGCTAGGGAATTGTTCAAGCCTCACCGTCTTCACGGTAGCTGTCAACAATCTTAATGGAT CAATCCCTGGAGCATTGGGCCGTCTTCAAAATCTCCAAACACTAAACCTGGCAAACAATAGTCTCTCTGGTGAAATACCGAGTCAACTCGGTGAACTGAG TCAACTCGTCTACCTGAATTTCATGGGGAACCAGCTTCAAGGCCCCATCCCAAAGTCACTAGCAAAAATGAGTAATCTTCAGAATCTTGATTTGTCAATG AACATGCTCACCGGAGGCGTTCCAGAGGAGTTTGGCAGCATGAATCAGCTTCTTTACATGGTTTTGTCAAATAACAATCTTTCTGGTGTCATACCAAGAA GCCTATGTACAAACAATACCAATTTGGAGAGCCTGATTCTGTCAGAGACTCAACTTTCTGGCCCAATTCCGATAGAATTAAGACTATGTCCATCTCTGAT GCAGCTCGATTTGTCAAACAACAGCCTTAATGGATCAATTCCCACTGAAATTTACGAGTCGATTCAATTGACTCATCTCTATCTCCACAACAACAGCTTG GTGGGTTCAATATCTCCTTTGATAGCAAACTTAAGCAACCTGAAGGAACTTGCATTGTATCACAACAGTTTACAAGGCAATCTTCCCAAGGAGATTGGAA TGCTTGGAAATCTTGAAGTCTTGTATCTTTATGACAATCAGTTATCTGGGGAGATTCCTATGGAGATTGGCAATTGTTCAAACTTGAAAATGGTTGATTT CTTTGGAAATCATTTCAGTGGAGAGATTCCTGTTTCTATTGGGAGGCTGAAGGGACTGAATTTGCTTCATTTGAGGCAAAATGAGCTTGGTGGTCATATT CCCGCCGCTTTGGGTAACTGTCATCAGCTAACTATTCTAGACTTGGCAGACAATGGCCTATCTGGTGGCATTCCTGTTACTTTTGGATTTCTCCAGGCTC TTGAGCAGCTCATGCTTTACAACAATTCCCTTGAAGGTAATCTTCCTTATTCGCTTACCAATTTACGGCATCTGACCAGAATAAATCTGTCTAAAAACAG ATTCAATGGTAGCATTGCCGCGTTATGTAGCTCGAGTTCTTTTCTTTCTTTTGATGTTACAAGCAATTCATTTGCCAATGAGATTCCTGCCCAGTTAGGA AATTCGCCTTCTCTTGAAAGGCTTAGATTAGGGAACAACCAGTTTACTGGCAATGTCCCTTGGACGCTTGGTAAAATCCGTGAATTGTCGCTGTTAGACC TGTCAGGGAATTTGCTCACAGGCCCAATACCTCCACAGCTTATGTTGTGCAAGAAATTGACACACATTGATCTCAACAACAACCTTCTTTCTGGTCCTTT GCCGTCATCGCTAGGAAATTTGCCACAGTTAGGGGAGCTCAAGCTCTCCTCCAATCAATTTTCCGGGTCTCTTCCTCCGGAGCTGTTCAATTGTTCTAAA CTGTTGGTGCTTTCTCTTGATGGTAATTTGCTGAATGGAACTCTTCCTGTTGAGGTTGGTAAGCTGGAATTTCTCAATGTTCTCAACCTCGAACAAAACC AATTATCAGGATCAATCCCTGCGGCCCTAGGTAAGCTGAGCAAGCTGTATGAGCTTCAGCTCTCGCATAACAGCTTCAGTGGTGAAATACCTTTTGAACT CGGGCAACTCCAGAATCTGCAAAGCATTTTGGACCTTGGCTACAACAATCTCAGCGGTCAAATTCCATCTTCTATTGGAAAATTGTCTAAACTTGAAGCT CTTGATCTGTCTCACAATCAGCTAGTTGGAGCAGTCCCTCCTGAAGTTGGTGACATGAGCAGTCTTGGCAAGCTTAATCTTTCCTTCAATAATCTCCAAG GCAAATTAGGCGAGCAATTCTCACACTGGCCAACTGAGGCATTTGAAGGAAACCTGCAGCTCTGTGGAAGCCCTCTTGATCACTGCTCTGTGTCAAGTCA GCGTTCAGGCCTAAGTGAGTCATCAGTAGTGGTAATCTCAGCAATTACAACCTTAACTGCCGTTGCTCTGCTCGCACTTGGACTTGCTCTCTTCATCAAA CACAGGCTGGAATTTCTCAGAAGGGTGAGTGAAGTGAAATGCATTTACTCTTCCAGTTCTTCCCAAGCTCAGCGCAAACCACTCTTCCGGAAGGGTACTG CCAAGAGAGACTACAGGTGGGATGACATTATGGCAGCAACGAACAATCTTAGTGACGAGTTCATCATTGGCTCAGGTGGGTCTGGAACAATCTACAGAAC TGAGTTTCAAAGTGGAGAAACTGTAGCAGTTAAGAAGATTCTGTGGAAAGATGAGTTTCTACTTAATAAAAGCTTCGCAAGAGAAGTGAAGACACTTGGC AGGATTAGGCACAGGCATTTAGTGAAGCTGATAGGGTATTGTAGCAGCGAAGGAGCGGGTTGTAATCTCTTGATTTATGAATACATGGAGAATGGGAGTT TGTGGGATTGGCTGCGTCAACAACCAGTGAATATCAAGAAGAGGCAAAGCCTAGACTGGGAGACGAGGTTAAAGATCGGTTTGGGATTAGCCCAGGGAGT GGAGTACCTCCACCATGACTGTGTACCAAAGATCATTCATAGAGATATCAAATCAAGCAATATATTGCTTGATTCCACTATGGAGGCGCACTTAGGAGAT TTTGGACTGGCAAAGGCACTAGAGGAGAATTACGACTCCAATACAGAATCGCATTCATGGTTTGCGGGCTCTTATGGTTATATTGCTCCAGAGTATGCAT ACACGCTCAAGGCAACGGAGAAGAGTGATGTTTATAGCATGGGTATCGTGCTGATGGAGCTCGTAAGTGGAAAAATGCCAACTGATGCAAGCTTTGGTGT CGATATGGACATGGTGAGATGGGTGGAGAAACATATGGAAATGCAAGGTGGATGTGGACGTGAAGAGTTGATCGATCCTGCTTTGAAACCACTCTTGCCT TGTGAAGAATCGGCAGCGTATCAATTGCTTGAAATAGCACTGCAATGCACAAAAACCACTCCACAAGAGAGGCCCTCATCCCGACAGGCGTGTGATCAGT TACTACATTTGTACAAGAATAGGATGGTGGATTTTGACAAGATGAATAATGATCCTTATTCATAA
AA sequence Show only first row Show all	>Potri.003G156200.1 pacid=42787490 polypeptide=Potri.003G156200.1.p locus=Potri.003G156200 ID=Potri.003G156200.1.v4.1 annot-version=v4.1 MAVPKRVLLLFAALLFCFSFGFVLCQNQELSSLLEVKKSFEGDPEKVLLDWNESNPNFCTWTGVTCGLNSVDGSVQVVSLNLSDSSLSGSIPPSLGSLQK LLQLDLSSNSLTGPIPATLSNLSSLESLLLFSNQLTGPIPTQLGSLKSLQVLRIGDNGLSGPIPASFGNLVNLVTLGLASCSLTGPIPPQLGQLSQVQSL ILQQNQLEGPIPAELGNCSSLTVFTVAVNNLNGSIPGALGRLQNLQTLNLANNSLSGEIPSQLGELSQLVYLNFMGNQLQGPIPKSLAKMSNLQNLDLSM NMLTGGVPEEFGSMNQLLYMVLSNNNLSGVIPRSLCTNNTNLESLILSETQLSGPIPIELRLCPSLMQLDLSNNSLNGSIPTEIYESIQLTHLYLHNNSL VGSISPLIANLSNLKELALYHNSLQGNLPKEIGMLGNLEVLYLYDNQLSGEIPMEIGNCSNLKMVDFFGNHFSGEIPVSIGRLKGLNLLHLRQNELGGHI PAALGNCHQLTILDLADNGLSGGIPVTFGFLQALEQLMLYNNSLEGNLPYSLTNLRHLTRINLSKNRFNGSIAALCSSSSFLSFDVTSNSFANEIPAQLG NSPSLERLRLGNNQFTGNVPWTLGKIRELSLLDLSGNLLTGPIPPQLMLCKKLTHIDLNNNLLSGPLPSSLGNLPQLGELKLSSNQFSGSLPPELFNCSK LLVLSLDGNLLNGTLPVEVGKLEFLNVLNLEQNQLSGSIPAALGKLSKLYELQLSHNSFSGEIPFELGQLQNLQSILDLGYNNLSGQIPSSIGKLSKLEA LDLSHNQLVGAVPPEVGDMSSLGKLNLSFNNLQGKLGEQFSHWPTEAFEGNLQLCGSPLDHCSVSSQRSGLSESSVVVISAITTLTAVALLALGLALFIK HRLEFLRRVSEVKCIYSSSSSQAQRKPLFRKGTAKRDYRWDDIMAATNNLSDEFIIGSGGSGTIYRTEFQSGETVAVKKILWKDEFLLNKSFAREVKTLG RIRHRHLVKLIGYCSSEGAGCNLLIYEYMENGSLWDWLRQQPVNIKKRQSLDWETRLKIGLGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSTMEAHLGD FGLAKALEENYDSNTESHSWFAGSYGYIAPEYAYTLKATEKSDVYSMGIVLMELVSGKMPTDASFGVDMDMVRWVEKHMEMQGGCGREELIDPALKPLLP CEESAAYQLLEIALQCTKTTPQERPSSRQACDQLLHLYKNRMVDFDKMNNDPYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	0	1
					Potri.013G070350 [exp]	2.82	0.9665
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	5.65	0.9652
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	6.92	0.9623	CYP716B4
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	7.14	0.9633
AT3G12830			SAUR-like auxin-responsive pro...		Potri.002G057500 [exp]	9.48	0.9573	SAUR13
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413800 [exp]	9.48	0.9600
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.019G044000 [exp]	10.95	0.9473
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	15.16	0.9546
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	16.73	0.9251
AT1G22500		AtATL15	Arabidopsis thaliana Arabidops...		Potri.005G160900 [exp]	16.79	0.8679

Compare expression of checked genes

Potri.003G156200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.