Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34920 172 / 6e-45 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT5G04460 122 / 2e-28 RING/U-box superfamily protein (.1.2.3) AT1G30860 120 / 9e-28 RING/U-box superfamily protein (.1) AT4G20160 114 / 7e-26 unknown protein AT2G27950 107 / 9e-24 Ring/U-Box superfamily protein (.1) AT5G44690 72 / 9e-13 unknown protein AT2G38195 56 / 5e-08 RING/U-box superfamily protein (.1.2) AT5G19080 55 / 1e-07 RING/U-box superfamily protein (.1) AT2G38220 55 / 1e-07 RING/U-box superfamily protein (.1) AT2G35330 52 / 1e-06 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074800 [exp] 1046 / 0 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G231100 [exp] 120 / 1e-27 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.008G030100 [exp] 119 / 1e-27 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 114 / 9e-26 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 113 / 2e-25 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.001G215166 [exp] 61 / 1e-11 ND / Potri.010G030600 [exp] 57 / 2e-08 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 57 / 3e-08 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.018G011300 [exp] 55 / 7e-08 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036249 [exp] 194 / 2e-51 AT4G20160 182 / 3e-48 unknown protein Lus10038656 [exp] 125 / 2e-29 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 125 / 3e-29 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 124 / 6e-29 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 119 / 3e-27 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 112 / 4e-25 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10038389 [exp] 105 / 3e-23 AT4G20160 155 / 2e-40 unknown protein Lus10038390 [exp] 89 / 2e-19 AT5G04460 49 / 1e-06 RING/U-box superfamily protein (.1.2.3) Lus10004419 [exp] 58 / 2e-08 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 57 / 5e-08 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.003G156400.2 pacid=42785162 polypeptide=Potri.003G156400.2.p locus=Potri.003G156400 ID=Potri.003G156400.2.v4.1 annot-version=v4.1 ATGGCTTCTTCCCAAATTGAGATTGCTTCGTCTTCACCGTTTGGTTGTGTTCTAAGAGATCACAACCGGCATGAAAGATGTAGTAGGGAGAGCACTGCCA GGGCAGCAGCTGCTGCTGCTTTTCAAAAGAATCTCAAAGGATTGGTTGGAGAAAATCTCCGTACTTGCATCTCTGTGACTTCTGATTCTGCTTCTAATGA GAATCCAACAAATCGTGTTAATAGCAAAACTGATGATCATCATCAAAACTTGCGGCGCTTGACCGATAACCAAGATAACATTCCCAAGAATGCACATGAT TCTTCGATTAGGAGCGGCAAGCAAGCGAGGATTCTTGACCAATGGGCCGCTATGCAGGCTCGAGAAATGGTGTCGACAATTGAGATGCAGAGGGAGAAGG CTGGGTTGTTGATTGCATCTTTGAAGAAACCATCTTCAATGCAGCAGAACTCTCAAGACTCTGAAAATCCTGCAGGTCAATCCAATAACCCCCGCATGAA TAAGAATCGCGGGGCCTCTTCTCTTGTTCAGATATGGGAGGCAAGGCTAAATCAATCGGAGGCGTGTCTGAAAAGGTCCCATAGCATGAATAATAGCAGG ACCGGTTCTGTATCTAGCCAGACTGAAACTGCATCGCCCAATACCGAGGAGAAATCAAGGCAATCTGATATAGCTGACTCTAATACGAAGAAGGAGGCTT TTGTGGATTGTGGCTCGGCAAAGAGTGCACCTTCATCCATACATTTCAGGAACACAGATGCAGGAGAGCCCGAGAAAGTTAAAATTGTTGACATCATTAG GAGACTGACATCTGATAGCAATGATGATGATCAGCCGTTGAACGGTGCTGGTGATGGCCTATCTAGAGAGAATAGGCATTCTTCAGTTTCTGATCGGACA GAGCAGAAAGTCTTGTCACAGGTTGTAAATTCACCAAAGATAAGAGGGCGACAAGCCTTTAATGATTTACTTTTGCAAATGGAACAAGAAAGGCATAGGG AGCTCGGCTCGTTAGGGGAGCGCCACGCTGTTTCAAAATTCGCTCAACGCGGCCGCATTCAGTGCTTGCTTCGCCTGAGATTCCTGCATCGTGGTGTGGG GTTTGAAGATCAACAGCGGCCGCGATCATCTCAATCAACAGCCTCGTCCAGTAGTGATCGATCACAACATGGGTCTACCATCATGCATCTCAGGGAGAGA TTCAGTGCAGGCATTGAGAATTCCATACAGAATCAGCCAACTGCTGATGGTCATCATCAAGAAAATTCTACTAGTGCTGAGCAGCAGAGTGAACCTCAAG TTAAGATCTCAACATCAAACACGTGTGAAGTCCAAGAAAAAGTTAATGAAAAAACTTGTGCAAGTTCGGATGTCACATGGCAAGGAATAAGCCTGCAGGT TGGAAATTTTGATCCTCCAGAAACTTCCAAAACAACATCACCCTTGAATGGTGACTGGGAAGATAATGAGATAGAAGAGGAGGGGTATTTTGAACAAACC AATTCTGACTGGTTTAGTGATATAGCTCGCCCACGAAGTTACTGGGAAGATCAAAGAAAAGCACGTTATGAAGAGAAGCGTAGTGGTAGCTCAGACAATG ATGAGATAAGGCAACTCCTTGAAAGAAGAACAGTATCAAGTTTTCTTGCAAGCGATTTGCGAGACAGAATAGACCAACTGATGATGTCTCGTGTACAAAG ACAAGTCAGTCAAGAAGATGAAGAACTAGATGAGGACAGTCAGGAGAGAATGGGACAGTTGATGTTGTCTTACTTCCAAAGGCACTCACACTCAGCAGAC AGTAGTGAAGAAGAAGAATTGGATGGAGGAAGTGGAGGAGGAGAAACGGCAGGAGAAGAAAGCATATCAGAAGAAGGAAGTCCAACTAGCCATCAAAATA TCGAAGCTACTGATTATTTTGATCAATCCTCATCATCTCAGCATTCTAAATATCCGTTCAGGTCATGGAATTTTTCTGATGAACAAGTTGCTGATGCTTG CCAACAGGCTCAAACAAAAGCTTTACACCTAACTCCTCCATCTCAAGTTTCCAATCAAGATAGGCGTTACTCTTCCTCCTTAAGTCATTCATCAATTGAA ATGGAACTCCTGTACGATTTAAAAGGGCACATGGAGCAACTTCAGCGTGAAATGTCTGAACTCCGAAAATCAATTCAGAGCTGCATGGAAATGCAAATGA ATTCGCAAAACTACTTGAAGGTGCAGGAAGTACATCCAGTTCAAGGGAATGGAAAGAATTCATTTGATAGGAGACTAAACAAACGCAGCTGCTGTATCTG CTACGAAACGCAGGTCGACTCTTTTCTGTATAGATGCGGGCATATGTGCACCTGTCTCAAATGTGCGCACGAGCTGCTGCAGAGTAGTGGAAAATGTCCA ATATGTCGAGCTCCAATATTGGATGTCGTGCGAGCATACCTGGATTCATGA
AA sequence Show only first row Show all	>Potri.003G156400.2 pacid=42785162 polypeptide=Potri.003G156400.2.p locus=Potri.003G156400 ID=Potri.003G156400.2.v4.1 annot-version=v4.1 MASSQIEIASSSPFGCVLRDHNRHERCSRESTARAAAAAAFQKNLKGLVGENLRTCISVTSDSASNENPTNRVNSKTDDHHQNLRRLTDNQDNIPKNAHD SSIRSGKQARILDQWAAMQAREMVSTIEMQREKAGLLIASLKKPSSMQQNSQDSENPAGQSNNPRMNKNRGASSLVQIWEARLNQSEACLKRSHSMNNSR TGSVSSQTETASPNTEEKSRQSDIADSNTKKEAFVDCGSAKSAPSSIHFRNTDAGEPEKVKIVDIIRRLTSDSNDDDQPLNGAGDGLSRENRHSSVSDRT EQKVLSQVVNSPKIRGRQAFNDLLLQMEQERHRELGSLGERHAVSKFAQRGRIQCLLRLRFLHRGVGFEDQQRPRSSQSTASSSSDRSQHGSTIMHLRER FSAGIENSIQNQPTADGHHQENSTSAEQQSEPQVKISTSNTCEVQEKVNEKTCASSDVTWQGISLQVGNFDPPETSKTTSPLNGDWEDNEIEEEGYFEQT NSDWFSDIARPRSYWEDQRKARYEEKRSGSSDNDEIRQLLERRTVSSFLASDLRDRIDQLMMSRVQRQVSQEDEELDEDSQERMGQLMLSYFQRHSHSAD SSEEEELDGGSGGGETAGEESISEEGSPTSHQNIEATDYFDQSSSSQHSKYPFRSWNFSDEQVADACQQAQTKALHLTPPSQVSNQDRRYSSSLSHSSIE MELLYDLKGHMEQLQREMSELRKSIQSCMEMQMNSQNYLKVQEVHPVQGNGKNSFDRRLNKRSCCICYETQVDSFLYRCGHMCTCLKCAHELLQSSGKCP ICRAPILDVVRAYLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34920		EDA18	embryo sac development arrest ...		Potri.003G156400 [exp]	0	1
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	14.07	0.7447
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	15.81	0.7580
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Potri.003G021700 [exp]	34.17	0.7477
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	34.29	0.7730
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	50.96	0.7241
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	53.47	0.7242	MYB222
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.008G057500 [exp]	70.45	0.6915
AT2G22140		ATEME1B	essential meiotic endonuclease...		Potri.007G077400 [exp]	78.24	0.6887
AT1G04030			unknown protein		Potri.013G047700 [exp]	79.82	0.7412
AT4G32350			Regulator of Vps4 activity in ...		Potri.018G079500 [exp]	92.95	0.6937

Compare expression of checked genes

Potri.003G156400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.