Plant FIBer expression Database

Potri.003G156600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20170 598 / 0 Domain of unknown function (DUF23) (.1)
AT5G44670 598 / 0 Domain of unknown function (DUF23) (.1)
AT2G33570 449 / 7e-154 Domain of unknown function (DUF23) (.1)
AT5G48190 148 / 5e-43 Domain of unknown function (DUF23) (.1)
AT3G60990 148 / 5e-43 Domain of unknown function (DUF23) (.1)
AT3G07380 146 / 4e-42 Domain of unknown function (DUF23) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G074600
[exp]
854 / 0 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1)
Potri.005G258900
[exp]
438 / 9e-150 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038387
[exp]
724 / 0 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10008076
[exp]
724 / 0 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10036247
[exp]
722 / 0 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10024731
[exp]
549 / 0 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF13704 Glyco_tranf_2_4 Glycosyl transferase family 2
Representative CDS sequence
>Potri.003G156600.1 pacid=42785463 polypeptide=Potri.003G156600.1.p locus=Potri.003G156600 ID=Potri.003G156600.1.v4.1 annot-version=v4.1
ATGGGTAAAGAGAGATCAGAGAAAGAGAAAGTTGGAGGGGGAGAGCATAACAAGAGGAATATGTTCGTGTCTTGTGTTGTAATGAACTCGTGTGCTGCAG
AGCTTAAACTTGTTTTAACAGCTCTTTTAGTTCTTTGCAGTATTGCTACTCTTTTCCAGATTCTTCCTTCACGTTTCGCCATCTCTGCTTCTGATCTCCG
TTTTTGCATCTCAAGAATCACCACCACCACCACCACCACCACCACTACCACCATTTCCCCCCTCAACTCCACCACCACCACCACCACCACCATTGCCCCC
CTCAACTCCACCACCACCACCATACCTCTAACCCCATCTCCACCCTCCGCTCAAAAAGATCAAGTGGCTGACAATGGTGTTATAAAGCGAGTATTTAACC
CCTATGGTTCAGCTGCTTATAATTTCATCACCATGGGTGCTTACCGAGGTGGACACAACACTTTTGCTATTATAGGCCTTGCTTCTAAACCTCTCCTTCT
CTACTCAACACCCACTTACCAATGTGAATGGGTCCCTGAATCGTCCTCTGCATCTAATTCTACTTTCTCCACCGTCTCTTACAGGATCCTCCCTGACTGG
GGCTATGGTCGTGTTTACACTGTTGTTGTAGTGAATTGTACCTTTTCAGAGGCAGTTAATGGTGAGAATTCAGGTGGGAAGTTGTTCTTGGAAGCCTCAA
CATCAGGCGGTGGTGATAAAAATCTTAACATTACTGATAGATTTGAGGTTTTAAACGAATCTCCAGGTGATTTAAACATGTCCCTTTTTAGTTCGAAGCC
TAAATATGATTATTTGTATTGTGGCTCACCTTTATATGGTGGGTTAAGTCCACAAAGAGTGAGGGAATGGATTGCTTATCATGTGAGATTATTTGGAGAA
AGATCCCATTTTGTGATACATGATGCTGGTGGGGTTCATGAGGAGGTTTTGGAAGTCTTGAAGCCATGGATGGAATTGGGTTATGTTACATTGCAAGATG
TAAAAGAACAAGAGAGGTTTGATGGGTATTACCATAATCAGTTTATGGTTGTTAATGATTGTCTGCATAGATATAAGTTTATGGCTAAGTGGATGTTCTT
TTTTGATGTTGATGAGTATATTTATTTGCCACCAAAGAATACTATCAAGTCCGTGCTGGATTCCCTCTCGGGTTATACTCAGTTCACTTTTGAGCAAATG
CCTATGAGTAGCAAGCTCTGCCTCTCTGCTGATTATGGTAGATATTACAGAAAGTGGGGGATCGAGAAGCTTGTTTACAGAGATGTGAAGAGGGGCATAA
GGAGAGACAGAAAGTACGCAATCCAGCCGCGCAATGTCTTTGCAACTGGAGTGCACATGTCCCAGAACTTCGCCGGTAAAACAACATACAAGACCGAGGG
CAAGATCAAATATTTCCATTATCATGGAACCATAGCACAAAGGCGTGAGCCTTGCCGGAACCTGCTTAATGTCACAGAGATCAACTTTGAAAACGTTCCA
TACGTTCTTGACACCACAATGCGAGATCTTGCGTGGTCTGTGAAGAAATTTGAGCTCAAAACGATCGGACCCAAGCTACAGAATACGCGGCAATGA
AA sequence
>Potri.003G156600.1 pacid=42785463 polypeptide=Potri.003G156600.1.p locus=Potri.003G156600 ID=Potri.003G156600.1.v4.1 annot-version=v4.1
MGKERSEKEKVGGGEHNKRNMFVSCVVMNSCAAELKLVLTALLVLCSIATLFQILPSRFAISASDLRFCISRITTTTTTTTTTTISPLNSTTTTTTTIAP
LNSTTTTIPLTPSPPSAQKDQVADNGVIKRVFNPYGSAAYNFITMGAYRGGHNTFAIIGLASKPLLLYSTPTYQCEWVPESSSASNSTFSTVSYRILPDW
GYGRVYTVVVVNCTFSEAVNGENSGGKLFLEASTSGGGDKNLNITDRFEVLNESPGDLNMSLFSSKPKYDYLYCGSPLYGGLSPQRVREWIAYHVRLFGE
RSHFVIHDAGGVHEEVLEVLKPWMELGYVTLQDVKEQERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEYIYLPPKNTIKSVLDSLSGYTQFTFEQM
PMSSKLCLSADYGRYYRKWGIEKLVYRDVKRGIRRDRKYAIQPRNVFATGVHMSQNFAGKTTYKTEGKIKYFHYHGTIAQRREPCRNLLNVTEINFENVP
YVLDTTMRDLAWSVKKFELKTIGPKLQNTRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44670 Domain of unknown function (DU... Potri.003G156600
[exp]
0 1
Potri.003G083000
[exp]
2.00 0.9754
AT4G36790 Major facilitator superfamily ... Potri.007G030800
[exp]
2.44 0.9701
AT2G22620 Rhamnogalacturonate lyase fami... Potri.014G004500
[exp]
2.82 0.9633
AT1G49960 Xanthine/uracil permease famil... Potri.009G086800
[exp]
3.00 0.9673
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G120800
[exp]
7.48 0.9262 FLA14.5
Potri.002G193400
[exp]
7.54 0.9103
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.009G012200
[exp]
8.12 0.9460 FLA14.12
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Potri.001G109300
[exp]
8.36 0.9481
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G121100
[exp]
8.83 0.9191
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Potri.001G373300
[exp]
10.00 0.9093

Potri.003G156600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.