Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20260 144 / 7e-44 ATPCAP1 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6) AT5G44610 41 / 0.0001 PCAP2, MAP18 PLASMA MEMBRANE ASSOCIATED CA2+-BINDING PROTEIN-2, microtubule-associated protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073900 [exp] 176 / 3e-56 AT4G20260 143 / 2e-43 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036243 [exp] 164 / 1e-50 AT4G20260 167 / 3e-52 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6) Lus10038383 [exp] 161 / 6e-50 AT4G20260 166 / 3e-52 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05558 [poplar] [flax] DREPP DREPP plasma membrane polypeptide
Representative CDS sequence Show only first row Show all	>Potri.003G157100.4 pacid=42784662 polypeptide=Potri.003G157100.4.p locus=Potri.003G157100 ID=Potri.003G157100.4.v4.1 annot-version=v4.1 ATGGGGTATTGGAAATCAAAGGTTCTTCCAAAGATCAAGAAGGTTTTTGAGAAGGACAGTGCCAAGAAGGCAGCTGGAGCTGAAGCTTGCAAGACCTTTG ATGAATCGAAGGAAGAAATCAGTAAGGAGTTTGAAGAGAAGAAGACTGAACTTGAACCTAAAGTGATAGAAATCTATGAAGCTTCATCAGCTGAAATCAA GACCTTAGTTAAGGATCCCAAAGAAGCAGGATTAAAGAAGCAATCTACTTCAGTTCAAAAGTTCCTTGATGAGCTTGTTAAAATCGAGTTTCCAGGATCA AAACTAGTATCTGAAACATCTTCAAAATATGGACCAGCCTATGTTTCGGGTCCTATTTTCTTCGTCTTTGAAAAAGTCTCAACCTTTATTCCGGTAGAGG AAAAGGCAGTCGAGGCACCAGCACCAGCACCAGCACCCGAAACAAAAACCGAGGAAGCAACTACTAGCACAGAGAAGGAGATAGTAGTTGAGGAAGAGAA GAAAGAAGAGGCAGTAGTAGCGGAGGCTTCAGAGAAGACTGAACCACCTCCAGCTGTGGCTGAAACACCTGCCAAGGTGGAGGAAGCAGAGCCACCAAAG CCGTGA
AA sequence Show only first row Show all	>Potri.003G157100.4 pacid=42784662 polypeptide=Potri.003G157100.4.p locus=Potri.003G157100 ID=Potri.003G157100.4.v4.1 annot-version=v4.1 MGYWKSKVLPKIKKVFEKDSAKKAAGAEACKTFDESKEEISKEFEEKKTELEPKVIEIYEASSAEIKTLVKDPKEAGLKKQSTSVQKFLDELVKIEFPGS KLVSETSSKYGPAYVSGPIFFVFEKVSTFIPVEEKAVEAPAPAPAPETKTEEATTSTEKEIVVEEEKKEEAVVAEASEKTEPPPAVAETPAKVEEAEPPK P

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	0	1
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	6.48	0.8416
AT3G13840	GRAS		GRAS family transcription fact...		Potri.003G065400 [exp]	9.79	0.8377
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G029100 [exp]	13.49	0.8212
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	21.63	0.8227
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	26.49	0.8267
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.001G166400 [exp]	31.87	0.7434
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.013G086100 [exp]	32.93	0.8339
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	48.34	0.7917
AT1G31710			Copper amine oxidase family pr...		Potri.010G088800 [exp]	51.17	0.8108	DAO.2
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	52.23	0.7824

Compare expression of checked genes

Potri.003G157100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.