Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20280 88 / 2e-23 TAF11 TBP-associated factor 11 (.1) AT1G20000 86 / 1e-22 TAF11b TBP-associated factor 11B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073500 [exp] 91 / 3e-24 AT4G20280 219 / 2e-72 TBP-associated factor 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038380 [exp] 87 / 7e-23 AT4G20280 145 / 1e-43 TBP-associated factor 11 (.1) Lus10036241 [exp] 74 / 2e-17 AT4G20280 188 / 1e-59 TBP-associated factor 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF04719 [poplar] [flax] TAFII28 hTAFII28-like protein conserved region
Representative CDS sequence Show only first row Show all	>Potri.003G157450.1 pacid=42785748 polypeptide=Potri.003G157450.1.p locus=Potri.003G157450 ID=Potri.003G157450.1.v4.1 annot-version=v4.1 ATGTTTGTTGGTGAACTTGTTGAAACAGCTAGACTTGTAATGAAGGAGAGGAAGGAATCGGGGCCAACCAGGCCTTGCCACAGTAGAGAAGCATATAGAA GACTGAAGCTTGAAGGCAAAGTACCGAAGAGATCAGTTACCAAGGCTCTTTCGGTAGATGGAACCCAGGCGCATATTTGGTGGTTGCTTGCTCGAGGTTT CTGA
AA sequence Show only first row Show all	>Potri.003G157450.1 pacid=42785748 polypeptide=Potri.003G157450.1.p locus=Potri.003G157450 ID=Potri.003G157450.1.v4.1 annot-version=v4.1 MFVGELVETARLVMKERKESGPTRPCHSREAYRRLKLEGKVPKRSVTKALSVDGTQAHIWWLLARGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.003G157450 [exp]	0	1
AT5G64010			unknown protein		Potri.005G064800 [exp]	3.16	0.7143
AT2G14285			Small nuclear ribonucleoprotei...		Potri.006G167000 [exp]	6.32	0.6943
AT5G25360			unknown protein		Potri.006G068600 [exp]	6.92	0.7039
AT5G64010			unknown protein		Potri.005G064951 [exp]	11.83	0.6632
AT5G10320			unknown protein		Potri.005G073600 [exp]	16.49	0.6687
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	16.61	0.6612
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	18.70	0.6709
					Potri.017G037400 [exp]	20.78	0.6716
AT3G02280			Flavodoxin family protein (.1)		Potri.011G027100 [exp]	20.78	0.6856
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.016G093200 [exp]	21.49	0.6627

Compare expression of checked genes

Potri.003G157450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.