Plant FIBer expression Database

Pt-ARPC2.1 (Potri.003G157700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ARPC2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30825 429 / 3e-152 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
AT2G33385 202 / 4e-62 ARPC2B actin-related protein C2B (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G073300
[exp]
542 / 0 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Potri.010G067100
[exp]
205 / 2e-63 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2)
Potri.008G170800
[exp]
202 / 5e-62 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008071
[exp]
448 / 2e-159 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Lus10002867
[exp]
243 / 3e-79 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Lus10023737
[exp]
194 / 7e-59 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2)
Lus10011780
[exp]
144 / 3e-39 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence
>Potri.003G157700.1 pacid=42786393 polypeptide=Potri.003G157700.1.p locus=Potri.003G157700 ID=Potri.003G157700.1.v4.1 annot-version=v4.1
ATGATTTTGTTGCAGTCCCATTCCAGATTTCTCCTTCAAACATTATTAAATCGTGTCCAAAATCTTGAAAAGGCAGTTGAATTGGATTACCACTGGGTGG
AGTTTGATGATGTTCGTTACCATATTCTGGTGTCAATGAAGAATCCAAATGTCTTGCTGTTATCCGTTTCGTTACCAATCCCACCTCCAGAAGCTGTTTT
CATTGGTGGACTTCCGTTTGGAGCCATAGAAGCTTTAAAGGCTGCTTATGGTGTGGTTGTGCAGATTCTTGATCCTCCCCGAGATGGCTTTAACCTCACT
TTGAAACTCAATTTGGGGAAACTTCCACTTGATGAAGAGCACAGGTATGCTCTCTTGGTAAAGATTGCATCTGTTAGGGAAGTGGTGCTAGGTGCTCCAT
TAAGAGTAGTTTTAAAACATCTTTCATCAAGGACTGTTATTCCTGGTATTGATGGGCTTCTGGCCCTCGTGCATCGGTCCAAAGAGTCTTTCTTCCTTGT
TCCTCAGCCAGACAAGGTTACTGTGGTATTTCCCATGAGATTCAAGGACTCCATAGATATTGCTTTTGCTACTTCCTTCCTTCAGGAATTTGTCGAAGCC
AGGCATACAGCTGGACTTAATAATGCTCCTCCTTGCTTGTGGTCTCCTAACCCACCTCTTGAATTGAAGGAAGCCCCTGCTGAAGCATTGTCTGCAAATG
CAGGATTTGTTTCTTTTGTCATTTTTCCTCGTCATGTGGAAGGCAAAAAGTTGGACCGGACAGTGTGGAATTTATCAACATTTCATGCATATGTTAGTTA
TCATGTTAAGTGCTCGGAGGGTTTTATGCATACTCGCATGCGAAGACGTGTAGAATCTATGATTCAGGCCTTGGATCGTGCAAAACCAGGTGTAGAGGAG
AAAAAGAAATCACCAAATAGCAGATCTTTTAAACGTCTGAGCCTCAAGGAAGCTCGAGCTAATTCAATTTCCTAG
AA sequence
>Potri.003G157700.1 pacid=42786393 polypeptide=Potri.003G157700.1.p locus=Potri.003G157700 ID=Potri.003G157700.1.v4.1 annot-version=v4.1
MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDVRYHILVSMKNPNVLLLSVSLPIPPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLT
LKLNLGKLPLDEEHRYALLVKIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMRFKDSIDIAFATSFLQEFVEA
RHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQALDRAKPGVEE
KKKSPNSRSFKRLSLKEARANSIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30825 DIS2, ARPC2, AR... DISTORTED TRICHOMES 2, ACTIN-R... Potri.003G157700
[exp]
0 1 Pt-ARPC2.1
AT5G67630 P-loop containing nucleoside t... Potri.006G118900
[exp]
1.41 0.8850
AT3G14470 NB-ARC domain-containing disea... Potri.018G017900
[exp]
3.31 0.9013 Pt-RGA.54
AT3G46020 RNA-binding (RRM/RBD/RNP motif... Potri.001G236200
[exp]
3.31 0.8656
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Potri.006G110100
[exp]
8.24 0.8766
Potri.004G212550
[exp]
8.83 0.8779
AT4G17830 Peptidase M20/M25/M40 family p... Potri.001G143200
[exp]
12.24 0.8373
AT3G57280 Transmembrane proteins 14C (.1... Potri.003G094300
[exp]
14.42 0.8576
AT2G20560 DNAJ heat shock family protein... Potri.017G016100
[exp]
14.96 0.8710
AT4G13630 Protein of unknown function, D... Potri.017G055100
[exp]
15.00 0.8756
AT5G54110 ATMAMI membrane-associated mannitol-i... Potri.001G408200
[exp]
16.12 0.8690

Potri.003G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.