Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20310 417 / 2e-141 Peptidase M50 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073200 [exp] 308 / 2e-102 AT4G20310 155 / 3e-45 Peptidase M50 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001219 [exp] 500 / 4e-173 AT4G20310 391 / 3e-131 Peptidase M50 family protein (.1.2.3) Lus10038402 [exp] 244 / 2e-74 AT4G20310 310 / 8e-101 Peptidase M50 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF02163 [poplar] [flax] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Potri.003G157800.1 pacid=42784861 polypeptide=Potri.003G157800.1.p locus=Potri.003G157800 ID=Potri.003G157800.1.v4.1 annot-version=v4.1 ATGGACGAGAGGCGATGGAGAAGACATGGGAGGGGACAAGCACAAACTTCGTTACTTCCTTTACGGACACCAACACGACCATCTCGTACTACTTTATCCA ACACAGTATCTTGCTGCTACTGCGATTACAAAATTTCTGCCTTAAATACCTCTCTCTATCATTTTGGACGGAAACAAGCCAAGTTGTTAAAGATTTGGTT TTCAATCGGCGTCGGCTTTAGCCTAACTGCACTCCTTGGAGTCACTTTGATTCTTGTGTGGGAATTAGGAAACTTTTTGCACCTATTCCACGGAAGCAGC GATCTTTCGAGTTCTTTACTATTTGGGTTTTCTCCTCAGGTGTATGGTTCGAGATTATCTGTTGCGGATGCTGGATATTTGTTGCTTTCTACTTTGATTT CTGTATCAGTCCACGAGTTCGGGCATTCCATCGCGGCTGCAAGTGAGGGCATACCGACGGAGTACATTGCTATTTTCCTTGCAGTTCTGTTTCCTGGTGC TCTGGTTGCTTTGAATTATGAGTTGCTTGAGGAGCTACAACCATTTACTGCACTTCGTGTGTACTGTGCTGGTGTTTGGCATAACGCTGTGTGTTGTGCA GTTTGTGCACTGGTGTTATTCCTCCTGCCCTTGATCTTGTCTCCCTTTTACATACATGGTGAAAGCCCCATGGTTTTGGATGTACCTTCTACCTCTCCTT TGTCTGGCTATCTGTCTCCTGGGGATGCAATTGTATCTTTGGATGGAAAACGCATCCATAATGATCAGGAATGGATGGAGACCACTGCTTTAATAGATGA ACGGACACTTCAAAGTTCAAATCTTTCAAAAAGTTTTGAAGCTCTTGCGATAGTTCATCAAATGAAGGGTTACTGTGTCCCTACTTCTGTGATAGAAGAA AGCAATGAGATGCTTTTCATAGAAAATCAATCTGCCTGTCCTGATGACCTTACTGAATTTGTAGCTGTTCAATGCTTCAATTCAAGCAAATCAGATAATG TCAATATTGAAGATGGTATAAGCCAAAGACAGAGGAGGCACTGCTTGAATGCTAAGGATGTTGTCAAGCTTAATAAATGTGGTGATGGTTGGGTTACAGA GATAACCAAAGGAAGTAGTTGCTTGTGTTCACAGGAGGAGTACTGCTTAAACCCTGTTCCACTTCCAGGGTCAATATGGGTTGAGATCACCTTTGCAAGC CCTTATTCTCCAGAATGCCTGCAACTTGGAAGAAATTCATTTCCAGCTTCTGGAGCTTCAGACTTTTCAGAGCATAAATGTGGTGGGACTTTTGTTTTTG TTGGTGATCTGATCTCGATGGCACATTCAGTTAGGTTAACAGCATATCAACCTCGCTGGGGATTTTCTTTCAGTGCACATCTTCCTAACATTCTGGAAAA GAGCTTAATGTACACATTCCACGTCTCTCTTACCCTAGCCCTCCTCAACAGTTTGCCGGTATACTTTTTGGATGGAGAATCAATTTTGGAGGTAGCTCTC TGCCACTTCACATCATTGAGCTCAAGGAAAAGGGCAAAAGTTATGCGAGCCTGTCTTTTAGGAGGGACTCTTATTTCCACGCTATCCTTTATGAGGATCT TCTTCATCAATTTTTGGTAA
AA sequence Show only first row Show all	>Potri.003G157800.1 pacid=42784861 polypeptide=Potri.003G157800.1.p locus=Potri.003G157800 ID=Potri.003G157800.1.v4.1 annot-version=v4.1 MDERRWRRHGRGQAQTSLLPLRTPTRPSRTTLSNTVSCCYCDYKISALNTSLYHFGRKQAKLLKIWFSIGVGFSLTALLGVTLILVWELGNFLHLFHGSS DLSSSLLFGFSPQVYGSRLSVADAGYLLLSTLISVSVHEFGHSIAAASEGIPTEYIAIFLAVLFPGALVALNYELLEELQPFTALRVYCAGVWHNAVCCA VCALVLFLLPLILSPFYIHGESPMVLDVPSTSPLSGYLSPGDAIVSLDGKRIHNDQEWMETTALIDERTLQSSNLSKSFEALAIVHQMKGYCVPTSVIEE SNEMLFIENQSACPDDLTEFVAVQCFNSSKSDNVNIEDGISQRQRRHCLNAKDVVKLNKCGDGWVTEITKGSSCLCSQEEYCLNPVPLPGSIWVEITFAS PYSPECLQLGRNSFPASGASDFSEHKCGGTFVFVGDLISMAHSVRLTAYQPRWGFSFSAHLPNILEKSLMYTFHVSLTLALLNSLPVYFLDGESILEVAL CHFTSLSSRKRAKVMRACLLGGTLISTLSFMRIFFINFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	0	1
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	1.00	0.8676
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	1.41	0.8387
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	2.44	0.8370
AT1G43245			SET domain-containing protein ...		Potri.005G193500 [exp]	4.24	0.8076	SDG954
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	4.47	0.7844	DCL903
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	5.29	0.8143
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	5.47	0.8147
AT5G15400			U-box domain-containing protei...		Potri.004G121200 [exp]	6.00	0.7885
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	6.32	0.8242
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	8.36	0.8149

Compare expression of checked genes

Potri.003G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.