Plant FIBer expression Database

Potri.003G158000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25840 549 / 0 OVA4 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G248900
[exp]
43 / 0.0003 AT2G33840 602 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005494
[exp]
504 / 4e-177 AT2G25840 446 / 3e-154 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00579 tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence
>Potri.003G158000.4 pacid=42784990 polypeptide=Potri.003G158000.4.p locus=Potri.003G158000 ID=Potri.003G158000.4.v4.1 annot-version=v4.1
ATGGGACGCGCTATTCTGTCACACTTTCTCATCCTTTCAAACCCCGCTCCTCTACTCTCCTCTTCTTCAATTTCAAAATTGAATGGTTTTGCAAGTAAAA
GTGTGCGAATTCGACAAAATTCAAAATACAGCAACGGTTTCCGCTGCTACTGCGACGTCTCGCACTCTCAACAAACTTCTCCTGAGAACTCTCCAACCTC
TGTGACTGTAAAGAAGAGGATAGTGTCTGGAGTGCAACCAACAGGATCTGTTCACCTAGGGAATTATCTTGGTGCCATTAAGAACTGGATTGCTCTTCAG
AATACATACGAGACTCTCTTCTTCATAGTAGACCTCCATGCGATTACACTACCATATGATACAAAAGAATTGTCTAAGGCAACAAGGGATACAGCAGCAA
TTTATTTGGCTTGTGGTATAGACGCTTCAAAGGCTTCTGTTTTTGTACAGTCTCATGTTCATGCACATGTAGAGCTTATGTGGCTTCTAAGTTCTGCCAC
GCCAATTGGTTGGCTTAACAGAATGATCCAGTTTAAAGAGAAATCCCGTAAGGCGGGGGATGAAAATGTCGGGGTTGCTCTTTTGACTTATCCAGTTCTT
ATGGCTTCTGATATTCTCTTGTATCAGTCTGATTTTGTCCCAGTTGGTGAGGATCAGAAGCAACATCTGGAGTTGACCCGTGAACTGGCTGAGCGTGTTA
ATTATTTATATGGAGGAAGGAAGTGGAAAAAATTGGGAGGGCGAGGAGGTGCTATCTTTAAGGTCCCTGAACCACTTATACCACCAGCTGGAGCCCGAGT
TATGTCACTAACTGATGGTCTTTCCAAGATGTCGAAGTCTGCACCTTCTGACCAGTCTCGAATCAATCTTCTTGATCCAAAAGATGTAATAGCAAACAAG
ATCAAGCGTTGCAAAACTGATTCATTTCCAGCCCTGGAATTTGACAATCCTGAAAGGCCTGAATGCAACAATCTTCTTTCGGTATATCAGCTTGTTTCAG
GCAAGACGAAAGAGGATGTAGCAAAGGAATGTCAGGGTTTGAATTGGGGCTCATTCAAACCTCTCCTAACAGATGCCTTGATTGAACATCTACATCCCAT
CCAGGTTCGGTATGAGGAAATACATTCTGATTCGGCTTATCTGGATAGTGTTTTGGAGGAAGGTGCCAGAAAAGCTTCAGAGATTGCAGATGCCACTCTC
AAAAATGTATACCAAGCAATGGGATTCCTGCGGAGATAG
AA sequence
>Potri.003G158000.4 pacid=42784990 polypeptide=Potri.003G158000.4.p locus=Potri.003G158000 ID=Potri.003G158000.4.v4.1 annot-version=v4.1
MGRAILSHFLILSNPAPLLSSSSISKLNGFASKSVRIRQNSKYSNGFRCYCDVSHSQQTSPENSPTSVTVKKRIVSGVQPTGSVHLGNYLGAIKNWIALQ
NTYETLFFIVDLHAITLPYDTKELSKATRDTAAIYLACGIDASKASVFVQSHVHAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVL
MASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK
IKRCKTDSFPALEFDNPERPECNNLLSVYQLVSGKTKEDVAKECQGLNWGSFKPLLTDALIEHLHPIQVRYEEIHSDSAYLDSVLEEGARKASEIADATL
KNVYQAMGFLRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25840 OVA4 ovule abortion 4, Nucleotidyly... Potri.003G158000
[exp]
0 1
AT1G22700 Tetratricopeptide repeat (TPR)... Potri.019G085200
[exp]
7.21 0.8647
AT1G66520 PDE194 pigment defective 194, formylt... Potri.017G123300
[exp]
8.66 0.7738
AT1G23180 ARM repeat superfamily protein... Potri.010G110200
[exp]
12.04 0.8357
AT1G58200 MSL3 MSCS-like 3 (.1.2) Potri.005G154000
[exp]
12.40 0.8162
Potri.002G044400
[exp]
18.70 0.7748
AT4G19830 FKBP-like peptidyl-prolyl cis-... Potri.012G119800
[exp]
28.46 0.8330
AT5G44520 NagB/RpiA/CoA transferase-like... Potri.011G155500
[exp]
40.42 0.7976
AT3G53170 Tetratricopeptide repeat (TPR)... Potri.009G058300
[exp]
42.04 0.8294
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
44.97 0.7219
AT4G36290 CRT1 compromised recognition of TCV... Potri.005G118400
[exp]
46.37 0.7282

Potri.003G158000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.