Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47860 605 / 0 Protein of unknown function (DUF1350) (.1) AT3G43540 135 / 9e-36 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072400 [exp] 789 / 0 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.006G217700 [exp] 135 / 3e-35 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009920 [exp] 643 / 0 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10024193 [exp] 592 / 0 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10042222 [exp] 590 / 0 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10008591 [exp] 528 / 0 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1) Lus10019508 [exp] 137 / 1e-34 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 107 / 9e-25 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07082 [poplar] [flax] DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence Show only first row Show all	>Potri.003G158400.1 pacid=42784847 polypeptide=Potri.003G158400.1.p locus=Potri.003G158400 ID=Potri.003G158400.1.v4.1 annot-version=v4.1 ATGGAGAGTTGCTGCATATGGAGTGCTCATCAACATCTGATTCAGTCCCACCATCGCTTCATCGGTTTTTCCAATCATAAAAATCAACTTGTTCATTTAC TGGCGGCAAATGGTCCCCGTAAATGTAATACCAGAAGCAGCAGAATCTTCTGTACTTATGAAGACCCCGTCAAGAAACCACCACAACCATCACCATCTTC TTCTTCGTCGTCGTCTTCGGCAATCCAACTTTACAATCAGATTGAAAGATTACTTACGGAGACCTCAAGACAATCACAAGATTATTGGGGTGGTTCTAAA GACTGGTCTGAAGTTGAGGGATCATGGGTTCTTAAACCAAAAAGCTCAAGACCCAAGTCAGTTGTTCATTTCATTGGTGGTATATTCGTTGGAGCAGCAC CCCAGCTTACTTACCGTTTATTTCTTGAACGCTTGGCAGAAAAGGGTGTTTTGGTGATTGCCACACCATATGCTAGTGGATTCGACTATTTCTTCATTGC TGATGAAGTGCAGTTCAAATTTGATAGGTGTCTTCGGTTTCTTCAAGAAACCGTACAAGATGTTCCTACTTTTGGCATAGGCCACTCTTTGGGAAGTGTC ATTCACCTTTTGATTGGATCACGATATGCTGTGCAAAGAAGCGGAAATATACTGATGGCATTCAATAACAAGGAAGCAAGTTCAGCTATCCCTTTGTTCT CACCTGTTCTTGTCCCAGTGGCCCAAAGCTTTGGACCATTTCTATCACAAATCGCATCATCACCGACCGTTCGACTTGGGGCAGAGATGACAATGAAGCA ACTAGAGAACTTTAGCCCTCCCATTATGAAGCAAGTTTTTCCTTTGGTTGAGCAACTTCCTCCCTTATACATGGACTTGGTTAATGGAAGAGAAGATTTC AGTCCCAAACCCGAAGAAACTCGTCGCCTTATAAAATCATATTACGGCATTTCTAGAAATCTTCTGATAAAGTTCAGGGACGATGCAATCGATGAAACTT CAATGCTAGCTCAGGTGCTTAGTTCAGAAGCAGCCATTAGTTCAATGCTAGACATGTCAATTCGCATGTTGCCAGGAGATCATGGGCTTCCATTGCAGCA GGTGTTCCCAGATGTCCCTCCTGCAATGGCAGATGCAGTAAACCGAGGAAGTGAGCTTTTTGCAAATCTTACCATGGGAACCCCGTGGGAGACAGTTGCC AAAGAAGTAGGCAACACACTAGGCGCAGACTCGAGCATCCTCCGTGCACGAGCATCAAAGGATGTAGACCAACTTGTGGAAGTGATAATATCCTGGATGG CTTCAAATTCAGGGCCGAAATTCTAG
AA sequence Show only first row Show all	>Potri.003G158400.1 pacid=42784847 polypeptide=Potri.003G158400.1.p locus=Potri.003G158400 ID=Potri.003G158400.1.v4.1 annot-version=v4.1 MESCCIWSAHQHLIQSHHRFIGFSNHKNQLVHLLAANGPRKCNTRSSRIFCTYEDPVKKPPQPSPSSSSSSSSAIQLYNQIERLLTETSRQSQDYWGGSK DWSEVEGSWVLKPKSSRPKSVVHFIGGIFVGAAPQLTYRLFLERLAEKGVLVIATPYASGFDYFFIADEVQFKFDRCLRFLQETVQDVPTFGIGHSLGSV IHLLIGSRYAVQRSGNILMAFNNKEASSAIPLFSPVLVPVAQSFGPFLSQIASSPTVRLGAEMTMKQLENFSPPIMKQVFPLVEQLPPLYMDLVNGREDF SPKPEETRRLIKSYYGISRNLLIKFRDDAIDETSMLAQVLSSEAAISSMLDMSIRMLPGDHGLPLQQVFPDVPPAMADAVNRGSELFANLTMGTPWETVA KEVGNTLGADSSILRARASKDVDQLVEVIISWMASNSGPKF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	2.23	0.9326
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	2.23	0.9473
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	2.64	0.9304	Pt-FIP1.3
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033000 [exp]	2.82	0.9443
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	3.46	0.9223
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	4.00	0.9302
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	4.47	0.9331
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	5.65	0.9177
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.001G023500 [exp]	7.00	0.8880
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	8.36	0.9294

Compare expression of checked genes

Potri.003G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.